MmuINT0101365 @ mm10
Intron Retention
Gene
ENSMUSG00000032591 | Mst1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:MGI Symbol;Acc:MGI:96080]
Coordinates
chr9:108081783-108082121:+
Coord C1 exon
chr9:108081783-108081919
Coord A exon
chr9:108081920-108082000
Coord C2 exon
chr9:108082001-108082121
Length
81 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
TGCATTGGCCCTGTTTCCAGCTG
3' ss Score
7.12
Exon sequences
Seq C1 exon
GTATACGCCCACGCCAAAGAATGGCCTGGAAGAGAACTTCTGTAGGAACCCTGATGGGGATCCCAGAGGTCCCTGGTGCTACACAACAAACCGCAGTGTGCGTTTCCAGAGCTGTGGCATCAAAACCTGCAGGGAGG
Seq A exon
GTAAGCGGCTGGGGTCAATCAAGCCTAAGGAGGGAGTGATAGGCCTGCCCCCACTTAGAAGTGCATTGGCCCTGTTTCCAG
Seq C2 exon
CTGTTTGTGTTCTGTGCAACGGTGAGGATTACCGTGGCGAGGTAGACGTTACAGAGTCAGGGCGGGAGTGTCAACGCTGGGACCTGCAGCACCCCCACTCGCACCCTTTCCAGCCTGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032591:ENSMUST00000035211:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=NA C2=0.256
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(55.8=91.5)
A:
NA
C2:
PF0005113=Kringle=PU(48.7=92.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATACGCCCACGCCAAAGAA
R:
CCACGGTAATCCTCACCGTTG
Band lengths:
174-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types