HsaINT1023637 @ hg38
Intron Retention
Gene
ENSG00000173531 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr3:49686947-49687285:-
Coord C1 exon
chr3:49687149-49687285
Coord A exon
chr3:49687068-49687148
Coord C2 exon
chr3:49686947-49687067
Length
81 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
3' ss Seq
CACTGGCTCTTTGTCTCCAGCCG
3' ss Score
7.27
Exon sequences
Seq C1 exon
GTACACGCCCACTCTCCGGAATGGCCTGGAAGAGAACTTCTGCCGTAACCCTGATGGCGACCCCGGAGGTCCTTGGTGCTACACAACAGACCCTGCTGTGCGCTTCCAGAGCTGCGGCATCAAATCCTGCCGGGAGG
Seq A exon
GTAAGCGGCGCCGGGTCAAGCTGGGAGAGTGGAGGGACAAGCCCACGTCCATCCACGAACCCACTGGCTCTTTGTCTCCAG
Seq C2 exon
CCGCGTGTGTCTGGTGCAATGGCGAGGAATACCGCGGCGCGGTAGACCGCACGGAGTCAGGGCGCGAGTGCCAGCGCTGGGATCTTCAGCACCCGCACCAGCACCCCTTCGAGCCGGGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173531:ENST00000449682:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=NA C2=0.317
Domain overlap (PFAM):
C1:
PF0005113=Kringle=PD(55.8=91.5)
A:
NA
C2:
PF0005113=Kringle=PU(48.7=92.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAATGGCCTGGAAGAGAAC
R:
CCTGACTCCGTGCGGTCTA
Band lengths:
182-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains