BtaINT0096134 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003116 | MTMR6
Description
myotubularin related protein 6 [Source:HGNC Symbol;Acc:HGNC:7453]
Coordinates
chr12:34181571-34183268:+
Coord C1 exon
chr12:34181571-34181687
Coord A exon
chr12:34181688-34183105
Coord C2 exon
chr12:34183106-34183268
Length
1418 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
3' ss Seq
AATGTTTTCTTGTGCTGTAGATA
3' ss Score
8.64
Exon sequences
Seq C1 exon
GTTGAGCAAGTGAAGTTACTTGACCGGTTCAGTACCAGCAACAAGTCGTTAACAGGAACACTGTATCTCACAGCCACGCATCTGCTGTTCATAGATGCTCATCAGAAAGAAACCTGG
Seq A exon
GTGAGGAGGGCCTGTGCTGCGCTCGTCACTGTACTTATAGTGATGGACTCGCACCATGTTTTCTCTGAACATGTGCAAAAAATGCTCCTGTTGGCTGGCTGTCTTAACTGAGGAAATTTCACAGTCATGTGATTACATCTGCCCTCCTTTTTTTTTTTTTTTTGCCCTCCTTTTTAAATAAAGCAGTGGTGTCACTGGAGTGAGTGGCATTCTTTCTCAGTGGTGAATTCTAAGCGAAGGCCAGAAACCGCACTCAAAGTTCCCAGGTGAAGAGTTAGAGCTGCCTCATCCCAGTAGGTCGGGGCAGCGCAGCACTGTGTGAAGGAGCTTGACTCGTCCTGAGGACCCGAAAGTCGGCTGTTGTCAGCAGAACTTAGGGATGCGGGGGGACTTGAAGCGAGGCTAGGGGAATGGGGAATAGCATGACTAGACGGCAACAAGTCTAGTTTTTTTATAATTGCCTTTTATTTTTTAATTTATTACTACATTGAATATTGTTGATTTACAGTGTTTTGTTTTTTTCTGTTGTCCAGCACAGTGACTCAGCTTTATGTTTACATACATACGTGTATTCTTTTCCATTGTGATTTGTTACAGGATACTGAATATAGTTTCCCGTGCTGTACAGTGGGACCTTGTTTATCCATCCTATATGTAATAGTTTGCATCTGCTAATTCCAAACTCCCACTCCTTTCCACCCCTACCTCTCTGCCCCCTTGGCAAACACAAGTTTGTTTTCTATGTCTGTGAGCCTTTTTTTGTTTTGTAGATATGTTGATTTTTATCGTATTTTAGATTCCACATGTAAATAGCATATGGTATTTGCCTTTCTGTTTTTGGCTTAGTATGATAGTCTTTAGGTCTGTCTGTGTTGCTGCAAATGGCATTATTTTGTTCTTTTCTACGGCTGAGGAATATTCCCTGTCATATATGCATGTCTTTATCCACTCACCTGTCAGTGGGCATTTAGGCTGTTTCCATGTCGAGGCTATGGTGAACAGTGCTGTTGTGAACACAAAGTGCGTGTATCTTTTCGAATTGTAGTTTTGTCTGGGTATGTGCCCAGGAGCGTCATTGCTATGTCATGTGTCAACTGTTTAATTGCTTTTCAATGGTCACTCCTCTGCCTTGTAGATGATGGCTTAGAGAAGGTCAGGAGTGGCTATGGAGAGAGCCTGCGGAGGCTCTTTGCAGTAGCTCAGGTGGAACAGTGGGGACATTGCACCTAGGGCCACGACAGTGGAGATGGAGAGAAGGGGGCAGGGTGCAAATATGTTTCTAAGGTCCTGTTCTCAAGCTGTGATTGTGTGTGGAACGGGTGCAGGGGTGGGGAGGTATCAGACATGTTTCTGGCATGGGCATTTGGTCGTTTAAAAGCTTTAGTTTGATGATGAGCGAATGTTTTCTTGTGCTGTAG
Seq C2 exon
ATACTGCACCACCATATTGCCTCAGTGGAGAAGCTCGCTCTAACGACTTCTGGGTGCCCCCTGGTGATCCAGTGCAAGAACTTCCGGACCGTGCACTTCATCGTTCCCAGAGAGAGAGACTGCCACGATATTTACAACTCTCTGTTGCAGCTGTCAAAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003116:ENSBTAT00000004052:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGAAGTTACTTGACCGGTTCA
R:
GCTTTGACAGCTGCAACAGAG
Band lengths:
270-1688
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development