Special

MmuINT0101992 @ mm9

Intron Retention

Gene
ENSMUSG00000021987 | Mtmr6
Description
myotubularin related protein 6 [Source:MGI Symbol;Acc:MGI:2145637]
Coordinates
chr14:60895966-60899082:+
Coord C1 exon
chr14:60895966-60896082
Coord A exon
chr14:60896083-60898919
Coord C2 exon
chr14:60898920-60899082
Length
2837 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
GGTGTCTATTTATGCTGTAGATA
3' ss Score
6.48
Exon sequences
Seq C1 exon
GTTGAACAAGTAAAGTTACTTGACCGGTTTAGTACCAACAACAAGTCACTGACAGGAACACTGTATCTTACGGCCACACACCTATTATTTATTGACGCTCAGCAAAAAGAAACCTGG
Seq A exon
GTAAGGTGGACGGTTTACTTTTGCATAACAGTAGGCTGGTTATTTAATCTCTGGTTATTTATCTCAACCAGTTTTTTGTTAGTTTTTTGTCTTTGTTGTTTTTGTTTTGGACAAGACCTTGCTATGTATCCCAGGCAGGCTTTGAACTTCCTTTATCTTCTGGAGAGCTGGGATTACAGGCATCAGAGATCAGTTACATTTTGTTTCTGTTTTTAAGTGACTTTTCTCTTCTATGAATAATTTATATCATTTGTAATATGAAGTTATGTAGAATACCAGACTTTTTAAAACTCTGGAAAAATTTAGAAAATGTCTCTTTGTTCCTTTAAAAGTTTTTTTTAAAAGTCAAGGTAACATTTGTACATATTAGCAATCGTATGGATTGTATAATATATTCCATAGCCTTTTAATGCCAAATTACAGGTAGGGAATTTTTTTGTAACCTTAAACATTGCACTCTAGTTATGCAAATATTTTGTATATATGTCCAAATACTGCCTTACAGGCATACTTGTAAGTAATGTGTATGTGTACATGTGCAGCTAACATGCAGTGGATGCTTCAATAACATGTGAGGTTTGAACTGTATAGGTCCATTCATTGGCTGAGTTGTTTTCTTTTTTTGTTTTTAAGATCTATTGTTTTTATGTATATGGGTGTATTTCTGTGTCAGGGTATATATGAATTCTGGTGCCCTTGAAGTACAGAAGAGAGCATCAGATCTCTGAAACTGGAGTTACAGGTGATTGTGAGACACTTGATGTGGGTGCAGGGAACTGAACTCAGGCTCTCTGCAGGACCAGTACATGCTTGAAACTCCTGAGCCGGATCTCCAGCTCTTTCCTTTTTTATTTTGTAGATTACAATTTAAAAACTAAACTTAACAGGTAAATCATATAGCATAGGAGTAGTGCATAAATTAAGAAAAAGTTAAATATGTCATGGATACATTAAATGTATGGTCATTATTATAAAATCAAATTGTTAAAACGATTTATCAATATTTACATGTATAGACACAAGGCGTCGATGGTACCATTGGGAGTTAACATACTACATGCTATACTACAGAAATTTTGTAGCCACTTCTGGTACTATTGCAGCAAGATCACCTCTGCAAGAATCAGCTTAAAATGCTGTGGGCTGCTGCTCATCAGATCACAAGCAGATCCTGATTGTTTCTCCAGGAAATTGCATAGAGTAATAAAAAGTGACATCCCGGGGACCTCTCATATGTTCACTGTGTCTAATGTATAACATAAAATGTATTAATGATTTATGCTGGAAATACTTGCAGTCCATAGATTATTAGCAGTGAAGTTTTGGGGGGGCTAAGTTAAGCTTGGGTTTTTGTTTTGTTTTTCTGTTTTTTAACTGGGATAAAGATATTGATGCCCCCAAATCCTGTGAGGTTGAAGGGTCAACTCCACAAGCATCTCGTGAGGCATTTCTATGCATGTTCTGCTGTCTCTCTTGGGTTTCTCTTGGGTTTCCTAGGAGTAAGAAGACATGGCTAGGTCTTATAAAAACGCATGTTCAAACTTTCACATGTTCTTTCAAATGGTTGTTCCAGGCGATTCCTCTTAGTGGAGTGTCATGTTTTCCTGTTTTCTCAGCCACACTGGCATGGCCACTGTACAGATGGGTCTGTAGATCTAGCTACAGGCCTGCCTATCTATCTAATTCACATGAGCAGCTGACTCTCACCTTGCTGAGGACAGGGTAGTCATCCCTGCACAGGTTTGGGTTTATAGGTTTTCTTTCTGTTGAGTTATCTGTTTTTTTTATTTCTATTTATTGACTTTTAAAAATTGTTTTAATTTTTTGTGCTAGGGACAGGTTTGGCTGAGTGATATTCCCAGCCCCGTCTTCTGATTTTATAAGAGTTCTGGGTTTCGTCGCTTTATGAGTTTGTGTGTTATCATTGGTTTGTCTCAGTAATAGCCAGTGTTTTGTATACTTTTATGTACATGTCTTTTTATTAAAGTTTACATTTTTAACCCAGATTTTTTTCAGTTTTTTCTTTTGTGTTTTTATGTGTGGTATAGTTAAGAAATCTTCCTGTGTGTCCCTGTAAGGAAGTTCCCTCTGGGTTTTCTTCGTCAGCAGCTCTAAGTTTTATTCCCACCTGGCAGTTCTTAAGCCACCTGGAAGACACCTAGGTGTATGGCATGACATGGAGTTAGGTGCTATTTTTTGACTGCTTCTTTCACGATAAAGCTTTGTGTATGGGGACCATTGTTGCTCTGTCTATCCTGCTCTTTTGACATATGGATTACACATTACGTGACTCGCTTCTTTATTAACAGTAGCATCTTAGATGTGTTGGTACACAGGATTACCGATCCTCTCAACTTGTTCTTGAAGGTTGTCATGGCTACCTGCTCTCTTGTCTTCTTCCTCATTCCTTCAGCAGATCCTGGCTGAGTACCTGCTGTGTTTTCATACCTCCATTCTAGGTATTTTGGAGACAATAGCCAATCTTAGCATAAAATTTCTGTTTTTCTGGAGATCACATCCTATGCAAGAGAAACAAATGACAAATAAGTAAAATGCAAATTACACTCTAAGTAGAAACACTAGGAAATCAAGTGGCATACTCCAGAGTCCAGAGGGGAACCTTACCACCTTGGTTCTGCTGCTACCCTCTGCCCCCTCGCTCAGCCAGCATTTATTGACGTGGAGGAAAAGAAATGACAACATATTCTTGATTCAGGCATTGCAATGTGTTAAATGTGATAGCACCTAATGCTTTGAGCATTAACATGTATGTAGTCTAGAGAAGAACAAACACCAGTGTTTGTGTGTTGGTGACTGGGTGTCTATTTATGCTGTAG
Seq C2 exon
ATACTACACCACCATATTGCCTCTGTGGAGAAACTTGCTCTGACCACTTCTGGATGCCCACTTGTGATTCAGTGCAAGAACTTCAGGATTGTGCATTTCATTGTTCCCAGGGAAAGAGATTGCCACGATATTTATAACTCTCTCCTGCAGCTATCAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021987-Mtmr6:NM_144843:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000022563f1139A





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000022563
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr13:25267942-25274070 
ALTERNATIVE
HsaINT0106295
(MTMR6)
Human
(hg19)
chr13:25842080-25848208 
LOW PSI
HsaINT0106295
(MTMR6)
Rat
(rn6)
chr15:40572785-40575691 
LOW PSI
RnoINT0095398
(Mtmr6)
Cow
(bosTau6)
chr12:34181688-34183105 
LOW PSI
BtaINT0096134
(MTMR6)
Chicken
(galGal4)
chr1:176343158-176345088 
ALTERNATIVE
GgaINT0115690
(MTMR6)
Chicken
(galGal3)
chr1:181390850-181392780 
LOW PSI
GgaINT0115690
(MTMR6)
Zebrafish
(danRer10)
chr24:24891362-24895838 
LOW PSI
DreINT0098732
(mtmr6)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"