GgaINT0115690 @ galGal3
Intron Retention
Gene
ENSGALG00000017112 | MTMR6
Description
NA
Coordinates
chr1:181390733-181392943:+
Coord C1 exon
chr1:181390733-181390849
Coord A exon
chr1:181390850-181392780
Coord C2 exon
chr1:181392781-181392943
Length
1931 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TGAGTTCTTATATGCCCTAGATA
3' ss Score
5.71
Exon sequences
Seq C1 exon
GTAGAGCACGTGAAATTACTGGATAGGTTCAGCACCAGCAATAAGTCTCTGACAGGAACTCTGTACCTTACAGCAACCCATCTGTTATTCATAGATGCAAACCAGAGGGAGACTTGG
Seq A exon
GTAAGGATAACAAGTGCCCGTGGCTCATAAGTGTGGGCTTTTCGGGTGCATTTGTTCTTCCTGAACACTGACTCTGTTTACTAAAATGTTTATCTAGGTTTAATTATTCCCTATGCTCTCCTTGTCCATGATATCATAGTAACTTAATAACTTAGATTGTACTCTTGCATGACGCTTTTGCAGTTGAAATCATATGATGTTGAAAACAATTTTCATGTTCCAAGGTTGCTGTTGTTTCTTCTCTATAACCTTCACTTGTATTCCTGACCAAATGTGTAGTGTGTTGTTGTTTGTTTTTTAACATCTGACTTGCACTGAAGTTCACAGGTGGTGTGGGAGATTGTTAGATAACTTGAGCTTTAGGTTTAAAGCTTCTGTATTACCTTTATCATATCAGATCCTGTCTGGGTTAAATGAGACAGCAAAATCCAACGAGTTAGGTTTGGTGGTCCTGTGCACATTTTCAGAGGGTTGTGGTGTTCATCTTTAGAATGAAAGAATTCTGAGGGGGTTGCAGCTCCTTGATGACTGTGACCAACGCTGTACAGGCAAAGTACAATAATTCCCACTAGTTTCTCTTCGCAGTTCCCTGGTGGCACATGTGTGCATCAAGTTCCGGCTCCCACTGTAGCACAGCTATGTAAGGTCATTGCCCCTCAGTCTGTGCTTCTCCAGGTTGAAATCTCATTTCCCTGGGCATGCTTTGCAGTTTTTTCTGCAGGTGGACTTTCTAACACTTAGGCACATAGCCTGGTTATCTGGTGTTTTCAAGAAAAAAGATAGCTTTTTCAGTGATACGTTCTTGGATACAGTGTAACACCATACAAAATTGTACTATTAATTATCATCCTTTGATATGAAAGGAGATGTTGGGGAGAACTTCAGAAGTTTTGTGTCTGCTTGTGCACCGCTTTAAAGGTCTTACCTCAGTGATATGAAATCTGTACTTTGAATATTGCATTTATGCAATGATAATGCAACTATCAAGCATAATCATAATAACGTCTCTCTTCAGAGGATATTCTCTTTATAAATGCATAGTTGGCAGCATAGTTTTCAGATAACTAATTCTGATCAATATTTATGAGGAAGAGATGATTGCTTTGGTGAAGTAATTGAAATGCTGTTGAGAACATCTTGTTCAGATGAGGTAATGTATCTGTGGCTTTCTTCCCAGGATTGAGCAGTTGTTACTTTCTCGTGCATTTCCCAAACTTTCTGTGGATTTAGCACAGATACCCATTCCTGTGACAGTCTTTTGCAAAAGTAGTTGAAAGTCACTTAGCTAAGACTGTCATGTCTACAATGGATAATAGTGCAGGAGAGGTTTCTGTTATCCCTGTGAGTGATTTGAAGTTTTACTCTTGGCTTGAATGTTAGAAAGCTGATGTAAGTAGATGACTGATGCACAAAATATTAAATGTTAACTGCACCAGCAGGCAAACAATGCTAAATATTGTAATTCTAAAATTTTCACTGTCTTCCATATGTTGTTATTTTCTGACTCATTTCACAATTCTGTGAAGCATAAGGAAGCATGTTTTTCTAGCTCTATAACAGAAAAAAATAATATATAAAAGAAGTCAAACAACTTGTATCCAATAAGGTGGGGTCCAAATAAGCTGTTCAGTTAGCAGAGCTATAGAAATTACCCCTGTGGAGTTCTACTTCTTGCTTTCTACACTCAGAAGGATATATATTATGTCTTTGTTTTGTTTTTGTATTTTAATGTAAGGTGACACTTCAGAATATGAGGAAAGAATGCCAGAATTGGGTTTATTCTTCTAAATATATTTTTTATAAGATTGACAAATCTAATCAAAATCCATATTCAGCCAAGCTTAATCTCTCTTATCTTTGATCTTGAATACAGTATGCTGTTCTCATTTTTCACCAGCATGCTTAACACTGTGAGTTCTTATATGCCCTAG
Seq C2 exon
ATATTACATCATCACATTGCTGCAGTGGAAAAGCTTCCCTTGACTACTTCTGGCTGCCCCCTTGTCATCCAGTGTAAGAACTTCAGAGTAGTCCACTTTGTTGTTCCCAGAGAGAGAGATTGTCATGACATCTACAACTCCTTACTGCAGCTGTCAAGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017112:ENSGALT00000027648:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGAGCACGTGAAATTACTGGA
R:
TGTTCTTGACAGCTGCAGTAAGG
Band lengths:
279-2210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]