RnoINT0095398 @ rn6
Intron Retention
Gene
ENSRNOG00000012918 | Mtmr6
Description
myotubularin related protein 6 [Source:RGD Symbol;Acc:1305378]
Coordinates
chr15:40572668-40575854:+
Coord C1 exon
chr15:40572668-40572784
Coord A exon
chr15:40572785-40575691
Coord C2 exon
chr15:40575692-40575854
Length
2907 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
GGTGTCTGTTTATGCTGTAGATA
3' ss Score
7.23
Exon sequences
Seq C1 exon
GTTGAACAAGTAAAGTTACTTGACCGGTTTAGTACCAACAACAAGTCACTGACAGGAACACTGTATCTTACGGCCACACACCTATTATTTATTGATGCTCATCAAAAAGAAACCTGG
Seq A exon
GTAAGGTGGACTGTCTACCTTTGCAACAATAGTAGGCTGGTTTTTAATTATCAGGTTTTTGTCTTTGTTTTTGCTTTGGACAGTGTCGTTCTATATATCCCAGACTGGTCTTGAACTTCCTATATATTCTGGAGAGCTAGGATATAGGCATGTATAATTACTTAGAGATCAATTAACTTTTTTTCTGTTTTCAAATGACTCCTCCCTTCTATGAATAATTTATAGCACTTGTAATATGAAATTATGTAGAATACCAGACTCTTTTAACCTCTGTAGAAACTTAGGAAATGCCTCTTTGTTCCTTAAGTGTCTTAAAAGTCAAGGTAATGTCTGTTCATATTAGCAATCATACGGATTACATAGTATATTCCACAGCATTTTAGTGCCAAATTACAGTAGGGATTGTTCTGTAACTTTAAACATTGTACAATACTTACGCAAATATTTTGTCTAGCTGTCCAAATACTGCATTGCAGGCGTACTTCTAAGTACATTTGTATGTGTGCGTGCAAATAGCATGCAGTGGAGGCCTCAGTAACACGTTAGGTTTGAGCTGCATAGGTCCACTCATATGCTGAGTTCTTTTCTTGTTTTTAAGATATTGTTTTTATGTATATGGATGCGTTTCCATGTAGGAGTATGTGCATATTTGAATTCCAGTGCCCTTGAAATGTGGAAGAGAGCATCGGATCTCTGAGACTAGAGTTACGGGTGGCTGTGTGCAGGGAGCTGGGCTCAGGTCCTCTGCAGGGCCAGCACACACTTTTACCTGCAAGCCACCGTATCTGCAGCTCTTCTGTCCTTTTCTAGGTTTTAGATTACAATTTGAAAAATTAATCATGTAGCATAGGAGTAGTACATACTTAAGAAAAAGTTAAATATGTCCTGGATACATTAAATATATGGTCATTTTTGTCATTTATTATTACAAAATCAATTATTACACAAATGTATCAAAATCTACACATGCAGACACAAGGCACCAATGGTACCATCGGGAGTTAGCGTACCGCATACTAGGCTACAGAGTAGTTTTGTAGCCACTTCTGGTACTATTGCAGCAAGATCGCCTGCTGCACAAATCTGCTTAAAGGCTGTGGGCTGCTGATCATCGAATCGTGAGCAGATCCCGATTGCTTCTCCAGGAAATTGCATGGTGTAATAAAAAGTGACATTCCGGGGACCTCTCATATTTTCACTGTTATCTAATGTATAGCATAAAGTGTATTAATGGGTTATACTGGAAATACTTGTAGTCCATAGATTATTAGCAGTGAAGGGGGTGGGGACTAAGTTAAGCTTGGGTTTTGTTTTTCTGGAATGAAGGTATCGACACCCCCAAATCCTGTGACATTGAAGGGTCAACTCCATAAACATCTCGTGGGGCATTTCTTTCTATATGTTCCGGTGTTTCTCTTGGACATTTTCCTGGGAGTAAGAAGACATGGCTAGGTCTTGTAAAAACTTGTTAAACTTTCATATTGTTCCTTCAAATGGTTGTTTGAGATTATTTCTTTTAGTGGAGTGTCATGCTTTCCCGTTTCCTCAGCAACACTGGCATGGCCACGGTACAGCTACCTGCCTGCCTGTCTAATTCAGATGAGCAACTGACTGCTCCCTTGTTGAGTGCAGGGAAGCCATCCCTGCAGATGTTTCGGCTTGTGGGTTTTCTTTCTGGTGAATTATCTGTTCTTTCTATTTCTATGTATTGACCTTTAAAACTTATTTTAATTTTTCGTGCTAGGGACATGTTTGGCTTAAGTGACATTCCCCAGCCCTGTCTTCTGATTTTATAAGAGTTCTGGGTTTTGTCACTTTATCAAATTGTGTGTCATCATTGGTTTGTCTCAGTAACAAGCCAATACAGTCTGTAAGCAATACAGTCTTCTGTATGCTTTTACGTACGCCTTTTCATTAAAGTTTACATTTTAACACAGATTTTCAGTGTTTTCTTTTATGTTTTTGTTCATGTGTAGTACAGTTAAGAAATCTTCCTGTGTGTCCGTGTAAGGAAGTTCCCCCTGTTTTCTTCTTCCTGTGTGTCCGTGTAAGGAAGTTCCCCCTGTTTTCTTCTTCCTGTGTGTCCGTGTAAGGAAGTTCCCCCTGTTTTCTTCTTCAGAAGCTTCAGGTTTCATTGCCCACCTGGCAGTTCTTAAGCCACCCGGGACCTAGGTGTGTGGCATGACATGAGATTTATTACTATTTTTTGGCTGCTTTGTTCCTTTGTTGCTAGATGCAGTCTTTGACGATAAAGCCTTGGGGTATATGTATGGGGACTGCTGTGCTCGGGCTGTCCCGTTCTTTTGGCATATGACCACGCTTTACCTGCCTCACCTCCTTGTGAACAGCAGCATCTTATGTGTCAATACACAGGATTGCCGATCCTCTCTACTTGTGTTTCAGGGTTGTCATGGCTACCTGCTGTCTTGTCTTCTTCCCTATTCCTCATTCCTTTAGCAGATCTTGGCTGAGTCCCTGCTGTGTTTCCATTCTAGGTATTTTGAAAAAAAGTAGCCAATTTTAGCATAAAATTTCTGTTCTCGTGGAGATGACATTCTAGGCAAGAGAAACAAATGATAAATAAGTAAAATACAAATTACATCCTAAGTAGAAACACTAGGAAATCGGTGGCATACTCCAGAGTCCAGAGGGGGAGCCTTGGCCATCTTTCTTACCGCCTTGGTTCTGCTGCTTCACTCTGCCGCCTCACTCAGACAGCATTTCTTGGCACGCAGGAAAAGAAATGACAACATTTTCTTGACTGAGGCATCAAATCATTGCAATGTGTTAAATGTGACAGCACCTAACATCTGAGGCTTTATCTGAGCATTAACATGTATGCACTCTAGAGACGAACAAATACCAGTGCTTTGTGTGGTGGTGACTGGGTGTCTGTTTATGCTGTAG
Seq C2 exon
ATACTACATCACCATATTGCCTCCGTGGAGAAACTTGCTCTGACCACTTCTGGATGCCCACTCGTGATTCAGTGCAAGAACTTCAGGATTGTGCATTTCATTGTTCCCAGGGAAAGAGATTGCCATGATATTTATAACTCTCTACTGCAACTATCAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012918:ENSRNOT00000065328:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]