BtaINT0096147 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010372 | MTMR7
Description
Bos taurus myotubularin related protein 7 (MTMR7), mRNA. [Source:RefSeq mRNA;Acc:NM_001075641]
Coordinates
chr27:18953819-18956158:+
Coord C1 exon
chr27:18953819-18953941
Coord A exon
chr27:18953942-18955995
Coord C2 exon
chr27:18955996-18956158
Length
2054 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGC
5' ss Score
6.57
3' ss Seq
ACATTAACTTTTGGTGGTAGATT
3' ss Score
5.55
Exon sequences
Seq C1 exon
GTTGAAAACGTCCGCTTGGTGGATCGAATTTCTTCTAAAAAAGCAGCCCTCGGGACTTTGTATTTGACCGCCACTCACGTCATATTTGTGGAAACGGCGCCTGATACAAGGAAAGAAACATGG
Seq A exon
GTATGCAGTCCTTATTTTTGGCTTTTTGTGTTTTCCATTGTTTGAAGTAACAAGTTTTGACTCTGTTTTGTCTGTTCTCTAGATGAGGAGGGTGGGACTTGGGGGGGTTGGGTGTTCAGAGCACTCTTTTTGGAATGTGAGCACTGCTTTTTTTTGTAAAGGGTCATGTCCACTTGGTCTATTTACTCACTTTAAATACTGATGACTTGGACATCATCAAAGAGAGACAGAGAAATAGCCAGAGGTGTAAGTGCTTCGTGTCACAGCTGACAAGTAGAGATTCAATAATGTTACTGTACCAGGTACAGTGTTTACACAGTGATTTGCAATCCGCTTCGTTCGTAGCATCCTGTGGTGCAGGCCATTTAGTCATTATGTTGTCTACAATTTTCTCATAATTTAAAAAAGAAAAAGTCTAGGGAAGAGTCCTATTATCAGGTATTTCTGCTACATAATAATGAGACCATTAGAAGGTCCTTATTTTAAGAGAGCTGCCCAACCATGGCATTAGGACCAGAACCAGAATCTGTGGATTGTAGATTCTGCTTTTTCTGTAGACTTGATCTTTGCAGCAGAAGGTGGCCCTCCCTACTTAGTGGAGAGGAATTTAAAGAATGAAGCATTGCCACTGAGGACTGAGCAGAGACCCTCCTGAAAGTCAGAGCACTTCAGCATGGTTTCCTTTCAAATAAATCTCTTCTGCAGCCTGCCTGACCACCAACAGCTTAGAAAACAACCATCTCAAGTTGCTGTTGAACTCAAGCATTCCATGTGGAATTAAGGAGCATGGTGGCACCTCCCAGCGGAACTGTCTCTAACTTTTGTTGATTGCAAGGTTTATTTTACTAACTTCTCGTGACCTTATTTAATTTTAGCTACCCAGTGCATTTCAAGCTTTGACGACCCAAATGTTCCCTTACCTGGAGCTGTGCAGAATTCTAGGCTGAAGGGTTTGCTTCATATAATGAGCTTGACTATCAGAAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAAGAACCCCAAAGTTACTGAAAGCTTTCAGCAAGCCCCTTTAAAAGCAAAAGGTGAGGGTTGGGTGTAGTTAGTTGTTGCAGACTTCTTGGGATCAAATCCTTTGCTCTTGAGGTCAGGTCATGGTCAGGTAACCATGTTCCTATAAATCTCTACCAAATGAATGTTATTCTCCGTCCTGACAAGAAAGGGCAAGGTCCCAGGGCACAACTCTCACCCTCCAAGGTCTCATTCCTGGCTAAGAGAAGGCCAGAGCTCAGCTGGCAGCTCCATCAGGGCCAGGTTCCCACACCCTGCCCAGTTGTCATCCCTAAGGGAGCCAGGCACCTAATCCAGCTGCCCCTTGGTCTCCTCCAGCTGCCCAAATGGGGGGAGACCAGGTCTCACAGACTGTGACCCAGACAGATGGCCACTGGTAGTGGGTCACAGAGACGGGGATGGGGGAGAGGTTCGCCACTCCTCAAGGCCTGGGCCATGGCTAGTGGAGTGCTTTAGTCAGAGCTCTGGAGCCCCGCAGGACATCATCCTCAATCTGTTCCCCGGGCCCCCTGCCTCACCCATTGGCTCAAGGCTGGGTGAGCTGGAGGGCCTCCAGGAAAAGGCCTGACTCTGCCTCTTAACCTCACTCTCCACCTGACGACCACCTCACTACCAACCCTTGAGCTGAATCACTTCCCCAGTGGTCCCTCATTGTCAGTTACCAGTGGGCAGTGCCCTCTGCAGCACTGACCAATAGCTGAGCAGGACGACTTATTGACAACCGACCAATGGCTGAGCCAGACCTGTTGCCTAGTAACATGGTGCAGGCATAATAAGGCCCAGCAATGGCTGCCTGCTAAGAGCTGTGCTCACCCTGCTCTGTGACAAGACCTGTTGCTTTATGTCCTATGTATCTGTTATCTGTGCTTAGTTTACCCACATTAACTTTTGGTGGTAG
Seq C2 exon
ATTCTCCACAGTCAGATCGCCACCATCGAGAAACAGGCAACGACGGCTACCGGGTGCCCTCTACTGATTCGCTGCAAGAACTTTCAGCTCTTACAGCTCATCATCCCGCAGGAAAGGGACTGCCATGATGTGTACATCTCTCTCATCCGCCTCGCGAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010372:ENSBTAT00000055365:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0289315=GRAM=PU(73.1=92.7)
A:
NA
C2:
PF0289315=GRAM=PD(23.1=21.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]