MmuINT0102005 @ mm10
Intron Retention
Gene
ENSMUSG00000039431 | Mtmr7
Description
myotubularin related protein 7 [Source:MGI Symbol;Acc:MGI:1891693]
Coordinates
chr8:40606759-40609016:-
Coord C1 exon
chr8:40608894-40609016
Coord A exon
chr8:40606922-40608893
Coord C2 exon
chr8:40606759-40606921
Length
1972 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGA
5' ss Score
5.85
3' ss Seq
GTGTTAACTTTCTGTCCCAGATT
3' ss Score
9.22
Exon sequences
Seq C1 exon
GTTGAAAACGTGCGCTTGGTAGACAGAGTGTCTTGTAAAAAGGCAGCGCTGGGAACTTTGTATCTGACGGCCACTCACGTCATATTCGTGGAAAATGCACCTGACACAAGAAAAGAAACCTGG
Seq A exon
GTATGACATCTGCATCTTTAGCCTTACATGTTTTTCATTGGTTTCAGGATGGGGACCGTGGACTTTTGGGGGCATTTTTGGGAGCGATTTCTGAGATGTATTAGAAAAGGAATTTCCTTCACAGCCCTAAGATGGGATGGATGAATGTGCTAGCAGTGGCTGAAGCTGCTGGAGCCTATGCATGGCCGGGAAGATCTTCAGTCCTACCAGGTGTCGCATGCGACAGCACCTGATGTGTTATAACTGTCCTTTGTAGGATGTTTTACACACATCTGTTATTGTTTGAATGTTTCATACATTGCTCATAGGCATCCCTCCATCCCCCTTAGTGCCTGATCCTGCCTCCGTTTCAACTTCATTTCCCCTTTTTATTGTTGTTAATAATGCCCTGAGTCCGGTTAGGACTGGATATATGCACATGGTTATATTGTTGAGGCCATGTCCTCAAAAGCGGGTGACTCTCCCTTTCTCTACAGCTCTCAGTTGCCAAGAGTTCCTCCAATGAGGTTGGAGCATCAGGGCCCCCCCCTCCCTTGCAGGGACTTCTAAATTATCGGTTCTATTATTTTACAATGTTAACATTACTTTTCTGGTAATTTTTAAAAGAAAAGGAAAGCTAGAGACTAGTCCCATAACCAGGAACTTTTGTGCCTAATCATCAAACCAGTAGACATTTCTGACGTTGTATAGCAAGACAAACATGGCCTTATAACCCATGGCCAAAATCTTGACCTGTAGATTCCATTCCTTACCCCGTGGACAGGCATACACTTAGCACCAGAAGGGTAGCCAGTACCTCACAGTAGTCAGGAACTTCATGGAGGACTGCCCTTAAGGACAGAACATGGATCTCCTCAAAAGACACGGTCCAGAATGGTTTATTTTCTTTTTTTGTTGTTGGGTTTTTTTTTTTTTTGGTTTTGTTTTGTTTTGTTTTGTTTATTTTAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCGTGGAAGTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTTCGCCACCGCTACCGGGCTGGTTTATTTTCTTATCAACCTATTTTCTTAATGGAATGGTGGTTTATTCCAGAGGCTGTAGAAGAGGTCAGGGGAGGGGAATGGGGAGTTATTGATCAGAGTAACCAGAAGGGGATGGGGAGTTATTGATCAGAGTAACCAGAAGACTCAGATAGAGCAGAGGGCTAGGCTTTGAGATCAAGCATATTGTATACATGGGTTTATAGTGGATCATAATATATATATTTCAAAATATCTTTGGAAAATTTCAAATATATCACCATGAAATGATAGCTCAGAAGTTTATGGTTGTATTGTATATACTAGTTAGCTTGATTTAATCATTTCACATCGTATCCATCAGGAAAGCACTCTGTACTGTGATCTGCCTGTTAAAAACAACAGACAGTTGGAAAGTGAAACATTTTCCTTTGCAGACTGCCTGACCACCAACAGCTTAGAGAACAAGGGGTTATTGAACTTGAACATCCCACGTGGAATTAAGGAACATGGTGGCACTTCCCAGTGGAGCCATCTCTAACTCTTACTGATTGCCAAAGTTTATTTTACTGACTTCCCATGACCTTATTTAAATTTAGCTATTAAACGCATCCAGCATTTGACTGCCCAAATGTTCCCCTACCTGGAGCTGTGTAAATTTAAATGCAGAATAGTCTTTCAAAATAATAATTGTGGATATCAAAGCTTGGTACTGAAAACTAAGTTACAGATTTTTTATAGTGGAGTTTTAGGTGGAACCCTCCAGCTCTTGTAAGCAGAGTGTGGGGGTTGAGCGAGGCCTACTTTTGAGGACTGTTTCTTGTCTGTGTGGCTCAGAGACCTGTCTGCCCTTTGTCAGTTTTGCTTCTTATTCGTGCTTACGGTACTCCTCGTGTTAACTTTCTGTCCCAG
Seq C2 exon
ATTCTGCACAGTCAGATCTCCACCATTGAAAAGCAGGCGACAACAGCTACGGGCTGCCCTCTGCTTATTCGCTGCAAGAACTTCCAGATCGTACAACTTGTCATTCCACAGGAGAGAGACTGCCACGACGTGTACATCTCTCTGATACGCCTTGCACGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039431:ENSMUST00000048898:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0289315=GRAM=FE(71.4=100)
A:
NA
C2:
PF0289315=GRAM=PD(21.4=21.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAAACGTGCGCTTGGTAGA
R:
CGTGCAAGGCGTATCAGAGAG
Band lengths:
279-2251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types