DreINT0098745 @ danRer10
Intron Retention
Gene
ENSDARG00000037101 | mtmr7a
Description
myotubularin related protein 7a [Source:ZFIN;Acc:ZDB-GENE-060421-7754]
Coordinates
chr14:30058792-30059187:+
Coord C1 exon
chr14:30058792-30058914
Coord A exon
chr14:30058915-30059024
Coord C2 exon
chr14:30059025-30059187
Length
110 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
GGTATATTTGTTTTTCTCAGGTC
3' ss Score
7.71
Exon sequences
Seq C1 exon
GTTGAAAATGTCCGGTTAGTGGACAGAAGTTCCTCTCGGAAATCTCAAGTGGGCACACTCTACCTGACAGCAACACACACTATCTTTGTAGGTAAAGGATCTGAGGACCGAAATGAGCTTTGG
Seq A exon
GTAAGTTCTTGCCTGCCGTACCACAATATTTTCCTTTTTTCACTAAACATTTGTTCTGTTTTTTAAATGTTCAGTTTTAAGTACTAAAATGGTATATTTGTTTTTCTCAG
Seq C2 exon
GTCCTGCACAGTTTAGTATGTAACATTGTAAAACATAAAGCATCACAGAGTGGATACCCTTTATTAATCCACTGCAAGAACTTTCAGGTCATACAGTTTATCATTCTTCAAGAGAGCGACTTGCACAATGTTTACATTTCACTCACACGTCTCTCCAGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037101:ENSDART00000053925:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAAATCTCAAGTGGGCACA
R:
TCTGGAGAGACGTGTGAGTGA
Band lengths:
246-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]