GgaINT0077020 @ galGal4
Intron Retention
Gene
ENSGALG00000013641 | MTMR7
Description
myotubularin related protein 7 [Source:HGNC Symbol;Acc:HGNC:7454]
Coordinates
chr4:62709981-62711025:+
Coord C1 exon
chr4:62709981-62710103
Coord A exon
chr4:62710104-62710862
Coord C2 exon
chr4:62710863-62711025
Length
759 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGA
5' ss Score
5.85
3' ss Seq
CATTTTCAATTCCCGTGCAGGTT
3' ss Score
8.75
Exon sequences
Seq C1 exon
GTGGAAAATGTACGGTTACTTGATCGCTTGTCTTCAAGAAAAGCTGCAGTGGGAACCCTGTACTTAACAGCTACTCATGTCATATTTGTGGAAAATGGTTCTGAAACTCGTAAAGAAACCTGG
Seq A exon
GTATGATTTTAATTTTTTCGGTTAGCTGTAAAGGCATGGCAATTTACTGATGGTAATTTGAAAATAACTTGCAAGGTACATTAAATACAGTAAATGAGTTTATACAGATGGTTCTATCACTGGGTAGTGTGTCAAATTCCAATTGAAAACCTTTGCAGCTTGATAATTTTTTTAAAAAATTTCTGTGGGTTCTGGCTATTGCAACACAGGGTAACACAGGGTACTGCAAGGGTATTCACTGTATAAATACTGGCTGTGATTATCCAAGGAACCACTGCTGTCAAGTTCAGCTGTTTAGAGAGTGAATTACTGCTTGGGCTCAGTCAGCTCTTGTCTCTCTCTCCCTGTGCTTCCATTCTGTCAGTTAGCAGGACCAACATTTTAGCCAAGAGACTTCAGTTAGTTTTATATAACTGATGCTGGTTCATCTTTTCACTATACAGGTAGACAAAAGAGCTCTTTTTCTGATGACTGTTAGCATACATTTAAAAACAAACAAACAAACAATCAAACAGAAGGCTTTGGACAGCATGACTAGGCTAATGTCTGAGCAGCTGAAAGTTTCCAGAAGTGCTTCTTTGTCTGTAGGTCATGTACCTGGCACTTCTGGAGCCTGATGCTGGAGATTGGAACAAAAATGCAAGAAGACGTGTGTGAGGATTTTCTGAAACAGCAGTGGAAGCTGCTGTGTCCTGGCAGATCTTTACAAGCAACTGTTTTTCTTTTTGAAGACTTGAATCATTTTCAATTCCCGTGCAG
Seq C2 exon
GTTCTCCACAGCCAAATATCCTCCATTGAGAAACAGGCCACAACTGCCACAGGTTGCCCACTGCTGATCCGCTGCAAGAACTTCCAGGTCATCCAACTGGTCATCCCTCAGGAGCGAGACTGCCACGATGTCTACATCTCTCTAATACGTCTGGCACGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013641:ENSGALT00000022188:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF116053=Vps36_ESCRT-II=FE(63.5=100)
A:
NA
C2:
PF116053=Vps36_ESCRT-II=PD(28.6=32.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAATGTACGGTTACTTGATCGC
R:
CGTGCCAGACGTATTAGAGAGA
Band lengths:
279-1038
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]