BtaINT0096161 @ bosTau6
Intron Retention
Gene
ENSBTAG00000035705 | MTMR8
Description
myotubularin related protein 8 [Source:HGNC Symbol;Acc:HGNC:16825]
Coordinates
chrX:101238246-101239679:+
Coord C1 exon
chrX:101238246-101238374
Coord A exon
chrX:101238375-101239544
Coord C2 exon
chrX:101239545-101239679
Length
1170 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
ACAAACATTTTTCTTTACAGGCT
3' ss Score
9.2
Exon sequences
Seq C1 exon
ATATGCAGTACCTACCCTCTTGAAATAGTGATTCCTAAATCTGTTACATTGGGAACGGTGGTTGGAAGTTCAAAGTTCAGAAGTAAAGAACGTGTGCCTGTGCTGTCCTACCTCTACAAAGAGAACAAT
Seq A exon
GTGAGTTGACAAAACTTCTCTGATGAGAACTAAACTTGGCTCTAGAAGACCTGGGTTTAAGTCACACTACTGTCACTTACTAGCTTTGTGACGTCAAGCATGTTACTTCTCTGAACTTTAGTACTTTTGAGGGGTTTTAAGTGGGTCATATCAGGAAAAAATATATGTGTAGTTTGTAAATTTTAAAGTGCTATGCAGATGTTAAGTGGCATTTGTAGTGTGTTCATTTATTTCTTTCCTGCTCTGCCAGCTCCTGCTTGATGGCAAGTAACTGTTAAATGAATGGGAACAGTCATATGAAAGGATATTTGTAGACTGTTGCCTCTCACTATAACACAGATTTCCTTATTCTTTCTCACTGTTTTTCATATAATTTAGGGTCTTATGGGAAAGCACTTGACTCCTCTGAGTCCCCTTCCATAAGAAGAGACTTCTTGCCTCTTGTGGTCTCTCTGAGATCTGGAATTAGACAAATAGTCAAGTTCTCAGGTGTTCAAGTGCTAAAGAGTATAGTAATGTAAGTGGTTGTCTGTGTCAAACTGTTGAAGTAAGCAGACTATATAACAACACTACCAAAATGTAAGGCAGTTCATTAACTCATCATTATTAGATGTACCTGCTACATAGCTGTGCTATTTTCATATTGAAATGGCTTTAAACAAACCAGTACTATGATTTGGCATTAACTCCTAAAATGAGTGAATTCTGTTCTCTTAAGAAACTCTAGATCTTTGTTCTATCTTGAATTCTTAAGTGAGCCTCTGGTATATGGGTGATATCACTGGGACTATAAAAAGCAAGAAAATTTCAGAAAAAATACTAGCCTAATACATACTAAAAATAGATAAAATTTTATTAAAAACCTCACGATGTGATTTTCTTGTAGTCTGGGTTTGTCAAGACTGGGTTGGGAATCTTAGCCATGTAGAAGAAAAAAAAGACTATCTGAGCAACAGTTTGTAGTAACACAGCCCACATGCTGGAGTGGGGAGGGAGGAAGGAAGCTGAGCTCAGTGTTACTGAAATGCTGGATTTCAGGGCTACGTATTTTTTTTATTTCACTATCTTGAGTTGGCTCATCCTCTTCTACTCACTGAACATGGGAACAAGGAGGATTTTTTTACCACCTGTAAATATGATCACTCAACTGACAAACATTTTTCTTTACAG
Seq C2 exon
GCTGCCATTTGCCGCTGTAGCCAGCCTCTATCTGGATTTTATACTCGTTGCATAGATGATGAACTCCTGCTAGAGGCTATTCGCCAGACAAATCCAGGGAGCCAGTTCTTGTATGTTGTAGACACAAGACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035705:ENSBTAT00000050192:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.1=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGTACCTACCCTCTTGA
R:
CTTTGGTCTTGTGTCTACAACATACA
Band lengths:
262-1432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]