DreINT0098774 @ danRer10
Intron Retention
Gene
ENSDARG00000008592 | mtmr8
Description
myotubularin related protein 8 [Source:ZFIN;Acc:ZDB-GENE-040426-1016]
Coordinates
chr5:21536785-21539521:-
Coord C1 exon
chr5:21539393-21539521
Coord A exon
chr5:21536920-21539392
Coord C2 exon
chr5:21536785-21536919
Length
2473 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAC
5' ss Score
7.64
3' ss Seq
TTTGTGCTGCTGTCTTTCAGGCT
3' ss Score
10.33
Exon sequences
Seq C1 exon
ATGTGTAGCACTTATCCATCCATCCTAGGACTCCCTAAAAGTGCCAGTGTTGCTACGGTAACAGGCAGTGCCAAATTTAGGAGCCGAGGGCGTTTGCCTGTTCTGTCTTACTATCACAAAGATACAAAG
Seq A exon
GTATACAAGCACATTCACTTTACAATGGCTGTTTTCCACAACCCAGTAACTCCCCATTTAGACAGCACTTTAAGACATTGGGGCAAATTGTAAGGTACGTTTAAAAGAAAATTTGATGTGAAGCATGTTTAAATTGCCTCTGTTCTAGCTTTGTTGGTAGTACACTACCTGATGAAAGGGTTGTCGCCTATTCAAATTTTAGAAACAACAAATAATAACTTGAGTTCTAGTTGATCATTTGGTATCAGAAGTGGCTTATATGAAAGACAAAGGCCTCTAGATTTCTTTTATTTTATTCATCTTCAATGCCTTCTCCTTTATCTTACCTCAGACATGCTCGATAATGTTCATGTCTTGTGATTGGGCTGGCTAATCCTGGAGCACCTTGACCTTCTTTGCTTTCAGGAACTTTGATGTGGGTGCTGAGTTATGAGAAGGAGCGCTATCCTGCTGAAAAATTTGCCCTCTCCTGTGGTTTGTAAAGTAATGGGTAGCACAAATGCCTTGATGGCTGTTGATGTTGCCATTCACTCTGCAGATCTCTCGCATGCCCCCATACTGAATATAACCCCAAACCATGATTTTTCTTTCACCAAACTTGACTGAATCTGTGAGAATCTTGGGTCTATGCGGGTTCCTATAGGTCTTCTGCAGTATTTGTATTGATTGGGATGTAGTTCAACAGATGATTCATCAGAGAAATCTACCTTCTGCCACTTTTCCAAATGATCAACTAGAAGTCAATTTATTATTTGTTGCTCTTACAACTAGGATCGACGACAAGACTTTTGTCAGGTAGTTTATGTTGTAGCCATCAAAGTTAAAATGTGTTGATATTAGGGATGGGAAGATTAACCGATATGTATCGATACGCGGTCATGCGCGTGCACGATGCGAGTGCATCGGTAGAGCAGCAGAGGATGAATGAAATTTTGGAAGCAAATCGAGATGCATCGGTTTTTCCGAGATGCATCGGTTTTTCCGAGATACAGCTTATATTTTTAATATAGAATGTATTTTTTATTTATTAACAAGTGTTGTTAACCTGTTTTTGGCGCATAATTTAATCGACCTACATAAAGTAAGCCTTAGCAACGGATTTGCGGATGTGCACACACTACAACTCAATGTATCAGGTGTGCGGATGAAGCTAGTGGAGCGCCCTCAGAAAGCGCGAGAAGCAAAACAAACATTTTATTCCCCACTGAGTTTTAAATCTAAAGTATGGCAACATTATGGATTTAAGGATGGACGACATGACAGGACAGATGCAATCTGCAAAATGTGCCGCGCATCTGTAAAATACGCGGGCAGTACGACTAATCTGATATCTCACTTGAAGCGGCGCCACGGTGTTGTTGTGAAAGCATCTTCCAGTGTTTCTGCATCCCCGGCTTTCGCACTGCTTCAACCAGCTCCAAAAGTGGTGAGAAAAGCATTGCAAGTTTTTTTTTCCATGCGCAACAGTTCTGCTCGCTCTACGCCAATAACGAATGCTATTGCATTGTTCATCTGCAAAGATATTCAGCCTAGTGTCACGGAGAACGAAAGTTTTAAACACCTCCTCCTGTTAATTTTTATTTAATTATAATAATATTAATAATAATAATGATAAAAATAATTGGGTGTCACGGTGGCACAGTGGGTAGTTTGACCACCTCACAGCAAGAAGATTGCTGGTTTGTTATATTTTTATTAGCCTGTTGTTTACAGTGACAGTGATGTTTCAAAGCAGCATAACACTGCTAGTTCACAACCTTAAGTTTTGAATAATCAGTGGCAAAATATATCTTTGTAAAACTTGTTTTCATAGTTGAAAAGTTAAATCACAATTCTTGTTGTGCAATGCTAAATTTATTTATGTTGAAAGAGTGCAAATATATACATTTATAATATATATTGCACTTATACATTCTGTTTATCTTGAAAATACTTAAATAATATGTGCTATATTATCTAAAATGGCCCTCTACTGTAAACTGACACTCTGGCTCCGAGAGAAAAGCCAGTTTGTAAAAAAAAGTCTTGGTTTTGCTTGGTTTATAAATAATCAAACTCATTCAATGGCACAGCATCATCTTTCACATAATCTCATAAACTTGATCTAATTAGTTAGCGCTGAAATATCGCATCGTATCGTGATATGGGTGTGAATCGTATCGTGTTGCATCGCAATATGTCACAAATGTATCGCTAATATATCGGATCGTATTCTTTGTATCGAGATACGTATCGGATCGGCATTATAGCTTAGATGCCCAACCCTAGTTGATATATAAGTTAAGTTTAAATATATTCAATTATATTACATACAAGTTAAAATAATTAACAAATTACAAATTCTTGATTTCATTGCGTTTTACAAAATGACTTGTGCATGGATTTAGGTTGTGCAAGTATTACAAGAAGTTGTGATGCCAACCAAATTATTACCAAATTGACATTCTTTGCATTTTGTGCTGCTGTCTTTCAG
Seq C2 exon
GCTGCGATTTGTCGCTGCAGTCAGCCTTTGTCAGGTTTGAACTCCCGCTGTGTGGAAGACGAGCAGATGCTTCAGGCCATCAGCCAAGCCAATCCAAACTCTCCCTTTATATATGTAGTGGACACACGGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008592:ENSDART00000002938:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.2=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]