GgaINT0073691 @ galGal4
Intron Retention
Gene
ENSGALG00000007590 | MTMR8
Description
myotubularin-related protein 8 [Source:RefSeq peptide;Acc:NP_001012717]
Coordinates
chr4:11589559-11590765:+
Coord C1 exon
chr4:11589559-11589687
Coord A exon
chr4:11589688-11590630
Coord C2 exon
chr4:11590631-11590765
Length
943 bp
Sequences
Splice sites
5' ss Seq
AATGTTAGT
5' ss Score
-1.83
3' ss Seq
TGAGCTGTTGTGTATTGCAGGCT
3' ss Score
8.68
Exon sequences
Seq C1 exon
GTTTGCAACACATATCCTCCAGAAATCGTGGTGCCTCGAGCTGCTAGTAAGGCAACAGTGATTGGAAGCTCAAGGTTCAGAAGCAGGGGGCGGATCCCAGTGCTTTCTTACTTATATAAAGAAAACAAT
Seq A exon
GTTAGTAGTTCAACTGTCTGCTGTCTTGGGTGGGGTGGGGCTGGAAAGCAAGGGTCCCCCTTCTTTTACAGTCCCCTTCCAGTGAAAGGAAAGGATGAGATAATTATTGGAGTGCTTTAACTTCTTGTTTAACTGTTCTTCTCATAAGGGCTCTAGAACTAGTTTGAGTCACAGAATAAGCCAGATACCAAAGGCATACCAGTGCTGTGTAAAAAGCACAAAAGCTCTTCCAGTTTCCTGTCTGGAAATTTCTTATCAGCTTTCAGGAATGTCTTTTGTGCTTTTTTTCTGTGTGGTTATTTTAATGTACTGTGTAGCTATATTGAATAATGTTTAACAAGGTGCGTGTTTAACAAGATGCATGTTAACTCAGCTACATTTTCTTACTCAGGAAGAGGAAGAGCCACCCTGAAATAACTCTTCTTAACTCAGAATAAGTGAAGGTTTCAGTTTTGTTGTGTTTTTTTTTCCTTCACTGAAGACCACAATGTAAATTTTTAACTTTGCTGTTTCAGCAGTGTTTTAGATGCAGATGTTAGGAAAATGCTGTCACAGTCAAGTTGTTGTTTTCCTGAGGAAGCATGCCTTGACGTGGGCGCCTGTGGGGTTATGCTGGCAACAGCTGAACTTCTGCAGCGTGCCCAGCACAGTTCTGTGTGGAATGGTAACAACAACTACTGAGCCAAACTGAAATATAGCATGGGATAGTGCGTATTAATCGAAGCATAGCGGGGCAGTAAAGGGCTCCTTAATCTGTTTCTTAAGAGTCTCAAAATCCTAGTTTTGTGGAATATTCCAATGGCAATTCTGCGTGTCCATCTAAGAAGCTGTTTTTCAGGGAAACTGAGTATGTGAGATATAAAACCAATGATCTGATATTCTTTCCTGCTTTCAGATTGTTTCTGCTGCATTGCCCTAAAGTGTGAGCTGTTGTGTATTGCAG
Seq C2 exon
GCTGCCATATGTCGTTGTAGCCAGCCCCTCTCTGGGTTCAGTGCTCGTTGTTTGGAGGATGAACAAATGTTGCAGGCAATCAGAGAAGCCAACCCTGGGAGTCCCTTCATGTATGTTGTAGACACAAGGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007590:ENSGALT00000012271:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(12.2=100)
A:
NA
C2:
PF066029=Myotub-related=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAACACATATCCTCCAGA
R:
CTTTGGCCTTGTGTCTACAACA
Band lengths:
262-1205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]