BtaINT0096203 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015325 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr16:43297293-43299018:+
Coord C1 exon
chr16:43297293-43297422
Coord A exon
chr16:43297423-43298767
Coord C2 exon
chr16:43298768-43299018
Length
1345 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGT
5' ss Score
8
3' ss Seq
TCATTGCTGTTTGGTCCTAGCTG
3' ss Score
6.59
Exon sequences
Seq C1 exon
GCTATCCGTGTGTTGGGGCTCCTAGGGGCATTGGATCCCTACAAGCACAAAGTGAACATTGGCATGATCGACCAGTCCCGGGACGCTTCTGCCGTCAGCCTGTCAGAGTCCAAGTCAAGTCAGGATTCTT
Seq A exon
GTAAGTTGAGGGGATCTGTGAGTGGCTTGCCAAGTGCTTGCCTCACAAAGCCCTCACTGGCTTTGTTTAGAAAGAGCCTGGTGCTGGATAACTATGAAATGATCCTTCACTGGTTCACTTGGTGACTTTTGAATGGAACGTCAGTAGTTTGCTCTTGAATCATAGGAAGGGCGCTGTGTCTAGTCTCCCTGTTTGCCTGGGTTCTTTGTTAAGGGTTAACAGACTATGTCTGTGCTCACTTTTTGTGCTGATGAGAAAGAGGTGAATTATCACCCCATCACATTTGTTCATCTGTCATTCTTTGTTAGTGCCTGTTTGATGTTTTCTCTTCCCGTGGCACCCAAGGAGGAAGAGGGTAGAACTGATTGTCCCAATTTTAATTGATAGGGAAATCTGATACAAGGCTCAGAGGGCATAGAAAAGCAGGTAGCAATCCGAATCCAGGGTTCTTTTTCCATCAAGTGGTCTGGCCCTGGAGTTCTTTGCCTTTAGATAAATAGCCTGAGAGATTGGGTAGGGCCTGGGGATGCCGGCAAGTTTTCTAGACTTAACCCACTGTCTCCTTCAGGCAGACTTATCTGAAAGTAGGAAAGTTCAACAGTGGCTTCCCCATCCAGTTCAGCAAAATAAAATAAATAAATAAAGTAAATAAACTAATTGTTTCTGAACTCTGTGGATGGGCCCCTTCTGCTTCCAGTGTGTTCTGTGTGTTAGAGAAGTGTGCCTGTGATGATGCCCTGTCAGACCCCCAGCTGTCAAGCGGAGCCTGAGCCATGTCCTCCAGGTGTTCCTCCACCCTCAGCACCGTGTCATCCGGTCTCTTGGATGTTCTGCTTCTCAGGGTCCTTATTCCCCCACCCTCCATACCCTCTCCACCCCCAGTCCTTGAGATCCTTGTTGTTCAGGTCAGGTAGCATTTGTTGCTAACTTGTCTGAATTCCCCAGGGGGACCAAGCAACTGCTGAACAGATGTTTACCTAATTTAATCCCCCTTACTTTCACTTGGGGGAGTAATTATTTTTATTGATGGTTTCAGCTACAAAGTTGTGAACTGGAATGATAAGAAGCTAAATTAAACACAGCAATTTAAAGCAAACCTATCATGTACTGTTTTAGGCTTTCATAGTTTAGATAACAGACAAGCCAAAAACTCTGTGTCCTTCATGGTGAGAGCCTATTCATTGGTTCCTAATATACCCTGTATTCCCAGTGCTGTTAGAATGTGGCAGGGAGAGAGACACGAATGCTAATGAGTGTCTGGAGGATTTTTGTCTGTTGTTAACCATGTTTTGTCCACAGTGAGAGTCGCGTGTAGCTCACGACCCTCATTGCTGTTTGGTCCTAG
Seq C2 exon
CTGACTACAGCACCAGCGAGATGCTGGTCAACATGGGGAACCTGCCTCTAGACGAGTTCTACCCGGCCGTGTCCATGGTGGCCCTGATGCGCATCTTCCGAGACCAGTCCCTCTCTCACCACCACACCATGGTTGTCCAGGCTATCACCTTCATCTTCAAGTCCCTGGGGCTCAAGTGCGTGCAGTTCCTGCCCCAGGTCATGCCCACATTCCTGAATGTCATTCGGGTTTGTGACGGGGCCATCCGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015325:ENSBTAT00000020386:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF118653=DUF3385=FE(25.1=100)
A:
NA
C2:
PF118653=DUF3385=FE(48.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGGCATTGGATCCCTACAA
R:
CCGTCACAAACCCGAATGACA
Band lengths:
345-1690
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development