GgaINT0133913 @ galGal4
Intron Retention
Gene
ENSGALG00000003339 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr21:4183217-4183825:-
Coord C1 exon
chr21:4183696-4183825
Coord A exon
chr21:4183468-4183695
Coord C2 exon
chr21:4183217-4183467
Length
228 bp
Sequences
Splice sites
5' ss Seq
CTTGTAAGC
5' ss Score
4.33
3' ss Seq
CGTTACCTTTTTTCTCCTAGCGG
3' ss Score
7.81
Exon sequences
Seq C1 exon
GCTATTCGTGTGTTAGGGCTGCTGGGTGCTTTGGACCCCTACAAACACAAGGTGAACATTGGCATGATTGATCAGTCACGAGATGCTTCTGCTGTCAGCCTCTCGGAGTCCAAATCTAGCCAGGATTCTT
Seq A exon
GTAAGCATTTGGAGAAACATCTGTTTTGGTTTCTCTTCCAAGTGAACATACAGAGTGCTTTGATATACAAACAACTTATGTTTTTTTTTTTCATTTATTTATTTTTCTTACCAGTTTATCTTCTCTTCTGAGCAAATTATTATTGTACAAGTTTAAGGTGCTCTTGAACTGGTATGGTATTGAAGAACGTTTAATATATAGCTTATGACGTTACCTTTTTTCTCCTAG
Seq C2 exon
CGGACTACAGTACCAGTGAGATGCTGGTGAACATGGGAAACCTCCCTCTGGATGAATTCTATCCAGCTGTCTCTATGGTGGCACTGATGAGAATTTTCCGAGACCAGTCCTTGTCCCAGCACCACACTATGGTGGTTCAGGCCATCACCTTTATTTTCAAATCCCTTGGACTGAAGTGTGTGCAGTTCCTGCCCCAGGTCATGCCAACGTTCCTTAATGTAATAAGGGTTTGTGATGGTGCCATCCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003339:ENSGALT00000005284:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF118653=DUF3385=FE(25.1=100)
A:
NA
C2:
PF118653=DUF3385=FE(48.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACGAGATGCTTCTGCTGT
R:
ATGGCACCATCACAAACCCTT
Band lengths:
300-528
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]