RnoINT0095451 @ rn6
Intron Retention
Gene
ENSRNOG00000009615 | Mtor
Description
mechanistic target of rapamycin kinase [Source:RGD Symbol;Acc:68371]
Coordinates
chr5:165285790-165287440:+
Coord C1 exon
chr5:165285790-165285919
Coord A exon
chr5:165285920-165287189
Coord C2 exon
chr5:165287190-165287440
Length
1270 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
TCTTTGTCACTTTGTCCTAGCTG
3' ss Score
6.96
Exon sequences
Seq C1 exon
GCCATCCGAGTGTTAGGGCTCCTCGGGGCTTTGGACCCCTACAAGCACAAAGTGAACATCGGCATGATTGACCAGTCCCGAGATGCTTCTGCTGTCAGCCTGTCAGAATCCAAGTCAAGTCAAGATTCCT
Seq A exon
GTAAGTTAGAACGAGAGTATTGTCAAGCTTGGACTCACATCCCTTCCTGACCATATTTAGAAAGAGTATTGGTCAGATGACTGAATCTCTTGGCAACTTGTGCATGAAGAGCCTGTAGTCCCTGCGTCTGCCTAGCAGGGATGTTGTACCTGATGTATCCAAGTCCTGTGTCTACCCACGGTCTTGTCAGGGTTAACAGGCTAACTTAAGTCTAGGTTACTTTTGACCGCAGGGAGAGATAGGAGTTACCCTGACACCACTGTCACCTGTCACTTTGTTAGTGCTTCTTTTTTATTTATTTCTTTTCTTTCATCCCTGGCCTCGTGGAGAGGAAGGATAACTCTTGTCTTCTCTGTTTTATTGAGGGAATTCAGGACATAGAAAGACCAGTAGCCCCCATAAACCCTGGGCCCTCTCTCTTTGCATCTCGTCTGACAATAGAGACCCCTTGCCTTTTGACGAGTGCACGAGCATGTGGGGAAGCGGATGGAATGTGAGCTCTAGGCCACCATCTACTGGGAAAAGCCTGTTTATGAGGTGAAGGTTCAGCAGTGGGTCTCCCCAGTGCTGTAGCAGAAGATGACTTAAGAAGATGAAACTGTTTGTTCACTACAATCTCTCTAGGTGTGAGTGTTCGGTTTTCTCCATCTGTTTCCTTCTCCCCTCTGGGTTAAGGAAGTGTAGCAAGCTTTTACCTTTGCACCTTGGCCATCAAGAGCAGAACCTAGGGTTCCTCAGCAGCGCCTGCCAACCAGCCCCTCTCCTGCCCCACATCTTACCTCCTCATTGCACGCCACCATTCCCAGGACAGAGTCCTTGCTGTTCAGGGTATGGCATATGCCTGCTAACTTGTCTGTATTCCCTGTGGGACTAGCCAGCTGTGGAACAGATGTTTGCCTAATTTAATTCCCTTTACTTTCATTTGGAGGAGTAATTATTTTATTGATGGTTTCAACTATGAAGTTGTGCACTGTAATGCTGAGAAGCTAGGTTAAACCTAGTAATTTAAAGAAAACCCATCATGTACTGTTTTAGGCTTTGGTGGTTTGGGTAATAGAAAAGCTAGAATGAGTTTTGCTCCTGACATGGAGAGCCTATTCATTGGTTCCTAATAGCCACTTGTCCCATACTCACAGCAGTGTCAGAATGTAGCAGAGAGAATGTATGCGTGCTAATGCCTCTGAGGGGCTTCGCTTGCTATTAGCCTGCTTAGCCTCTCATCAAAGTCCTGTCACCAGTACTTATGACTCTCTTTGTCACTTTGTCCTAG
Seq C2 exon
CTGACTACAGCACCAGTGAAATGCTGGTCAACATGGGAAACCTGCCACTGGACGAGTTCTACCCCGCCGTGTCCATGGTGGCCTTGATGCGGATCTTCCGAGACCAGTCCCTCTCTCACCACCACACCATGGTGGTTCAGGCCATCACCTTCATCTTCAAGTCCCTGGGGCTCAAGTGTGTGCAGTTCCTGCCCCAGGTCATGCCCACGTTCCTTAACGTCATCCGAGTCTGTGATGGGGCCATCCGGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009615:ENSRNOT00000014167:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF118653=DUF3385=FE(25.1=100)
A:
NA
C2:
PF118653=DUF3385=FE(48.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCGAGTGTTAGGGCTCCTC
R:
TTAAGGAACGTGGGCATGACC
Band lengths:
344-1614
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]