BtaINT0096217 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015325 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr16:43363964-43365866:+
Coord C1 exon
chr16:43363964-43364064
Coord A exon
chr16:43364065-43365750
Coord C2 exon
chr16:43365751-43365866
Length
1686 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
GTGCGTGTATGCACATGTAGGTC
3' ss Score
5.99
Exon sequences
Seq C1 exon
GGGGCAGCTTCACCAGCAGTGCTGTGAAAAATGGACTCTGGTTAATGATGAGACCCAAGCCAAGATGGCCCGCATGGCTGCTGCAGCTGCATGGGGTTTAG
Seq A exon
GTAAGGCTGCCCTCCCAGGCATGGGGAGGACAGTGAAGCTGGAGGCTCGCCTCTGAGTAGCAAGGCACTGTGGCTGCAGGCAGAGTGTCAGGTCTACAGAAGCGTGAAGCCATTCATGTCCACTTCCACCTCTTCCGTTGGTCCTTTCTGTCTTCATGGCTTTGATTAACTTGTTAGACATGCATGAAAATCTCTCTTCACAGGGAAGCCAGGGAAAACAGTGTGCAAGCATCAACACTGAGATGCTTAGTGAAGTTTGCATTCTGGCTCCGTTGTCATTAGCCTCTTTCTGCGTTTCTGCTTTCCTGGGGCCTCTGTGTCATGATCCACTATGATTGCTGGAGTTCTACCAGCATGTTTTTACCCCATAGGAATAATGAAAGAAGTCAGCTGTCTATCTCCTTGATTTGTTAATTTTATTGTAGAATTTTCCCAACGATGATAAAAGTAAATAGTACAATGAGTCCCTATATGCTGTTCACTTCCTCCAGCAGTTACAGACATTCTGATAGTCTTGTTTTCTCTCTTCTCCTCCTTGCTGCCCAACACTCACCCACCTTTCTCACTCCCTGAGTGTTTTCAAGCAGCGATTTCCTTTTAATCCCCACAGAAAAGTGTCATGTTCTGATCTCAGGCCCCAGCAGAGAGGATTATCCATGTCTGTCCCAGAAGTACTCTTGGCCAGAGAGGGAGGGTCCGTGGGTGTCCCAGGTGGAAGCTGCACCTGTGGAGTCCAGAGGAAGGTTACATAACGTCCGCCTCCATCCCCACCCTCTGAGTCACAGAGCTCACATCCTCTCCTTTCATGAGCTCTGAGCTGGATCCAGAACATTTTTCAGAAATGAATTGCTTCCTGAGGAGTCACTCTTTGTTATTCACTTTTGCCCAGAGGCACAGAGAATGGATGCACCGGTGGTCTGGAGTGAAAGGCAGGGAAAGGCCTCATAAAATTGGGGGCCCTGCAGCGTGCAACTAATGAAGCCAGTGTCTTTTCTGCAGATGGTCATAGAAATCCTGGCATTTGAGACATGCTCACCCCACCAGGGGAAGCAAATATCGTTCCCAGATGCCACCATTTCCCCAGCCTGCCGTGATATAGGACTTCTGTGCTATGACCTAGCCCATCTTTCTGTTGTAACAGAGCCTCTTAAAATATTTATCGCCTCCTTCTGAGGCAGAGGTGCTGCCAGCATGAGATGAGTTAACTGTCTCATCCTGTCCCCTGTCCAGATAATGATCCATATCAGTTGTTTTCGAGAAAATGTAATTTCCAAGGTATTACTGAACTGTGAGATGCTCCACTGGTAGGGGAAAGGCTCTTGGTCTCACTGAGAGAGTCCCTGGTGAGTTCTCTAGGTTAATGAGGTGCTGCACTCCCCCTCCTGACCTGTGGGCTCATACTCATGTAGCTCCTTCCATCTCTCATGGAACTAACTCCCAGGGGCAGCCACAGAGGCCTGTGTTTGGAAGACAGCTATGATGTTGTTAAATTGGCTTGTTCAGCCTCACAGAGTATAGAGGCTCTCTGCAGGATTCTGATACATCAGCCTCAAGATTGTCCTATTTGAACCCCAAGCTAAAAGCAAGTAACAGTGACAAGGCCTATTTGATATACTGCCTTTAGCCCAGCAAGCTTACCACTCTCATATTTTCTCTGTATATGTGTGTGCGTGTATGCACATGTAG
Seq C2 exon
GTCAGTGGGACAGCATGGAAGAGTACACGTGTATGATCCCTCGGGACACCCACGACGGGGCATTTTATAGAGCTGTGCTGGCGCTACATCAGGACCTCTTCTCCTTGGCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015325:ENSBTAT00000020386:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(19.4=34.3),PF0225918=FAT=PU(2.8=31.4)
A:
NA
C2:
PF0225918=FAT=FE(9.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGTGCTGTGAAAAATGGAC
R:
GTGCCAAGGAGAAGAGGTCCT
Band lengths:
198-1884
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development