DreINT0098829 @ danRer10
Intron Retention
Gene
ENSDARG00000053196 | mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:ZFIN;Acc:ZDB-GENE-030131-2974]
Coordinates
chr8:46162718-46165051:-
Coord C1 exon
chr8:46164951-46165051
Coord A exon
chr8:46162834-46164950
Coord C2 exon
chr8:46162718-46162833
Length
2117 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
3' ss Seq
GACTTCTTTGTGTTTGTCAGGCC
3' ss Score
7.54
Exon sequences
Seq C1 exon
GGGTCAGCTTCACCAACAGTGCTGTGAGGAGTGGACTCTGGTCAGTGAAGAAACTCAAGCCAAGATGGCCCGCATGGCAGCAGCTGCGGCGTGGGGACTGG
Seq A exon
GTGAGAGGAGAAATACTGATTAATTAAAGAGACATTTCAGTTTGTTTTTTAAAAAAAAAGAGACTTTAACTTACTTATTACACAGAGACTTGCCACAAAACGTAAAAAAAAATTGACAAAAAAAAAACTTTCCAGAGTCGTAACAGTTAATTATTGTTTAATTAAACGCAAAGCTGACAGAAACAAAAAGGCTGAATGGAGCAAACACTAACCTGCGTATTATTCAGTCCAGAGATGGAGGGCTGTTATATAGGACTGAAGGGCTTTATTCCTTGCAAACAACCACCTAAATGTGCTTCATCCCTTCTATTACACAGCTATTTGCCACAAAACGTACAAATTAGACACAAAATATTGTTCTGAGACTCAATAGTTTATTAAGTCTGTAATTAAAGGCACGAAAACTAAGATGGCTAATGAAGCATACGCTAAAGCTGCATTTACAATGCATGGTTCAAGTGACTCAATTCCGATTTTGTTCTCTCATGTGGCACAGATCGGATATGGCCCATGTACGTGTAAGCAGGAACAAATCATAGGGATTCCGATTTACTCAAATAAGATTCAGGCCTTGTTCGTATGTGGAAATTTATCCGATAGAAATCAGACCTGTGCCCTCGTGTCTGCAATGTAAGCAGGTAGTTCAGATTTTCACCTGTCAATGCAAGTCGCGCATCATTGAAAACCATAGCAGATGACGTCAAGTCTGACACTTTCATTTCAGAACAGACTAAAGCAGAGTCCCAAACCTAAATCTCATACATGAGGACTAAAAAAAGCTTTTGTATTTTGTTATACAATATCCGCCACCAAACCAATATAATACAAAACTATTGCATACATCACTTGCATAAATCAGGGCCATAGACATGCCATTAAGAGGCCTACTGGTTTAAAAAGGCCTAGATTAAAAGAAGATGGCCAAGTGAGAACTTTTCTGTCATAAACTATAGTAAAACAGCTTGTCAAAAAGAATAAATAAAAAATGAAACCCTGCAAACAGGAATGGAAAAAAAGATCACTCTTTAATTATCAGCTGTCAGTCAGCGCCCGCTCTTTTTTTCCTGGTCATTGCACGTTTGCTGTGTGCTGTGTAAATGCAGACAATCGGATACGAGTCACTTTTAAAAGTTGATGTAAGCAGGTCATCAAAAAAATCGAATACAGTCACAAAATCGGAATTGACCATCAAGATCTGCAGTGTAAATGCAGCCTTGTTACGAACCCTTTTTTTAATCAAATCAAAATAATTAATTCATAAAGGGAACGCAACATAAAGAGGACACATGAACTAAGTTGTCTAAATTAATACATTTATTACAACCAAAACAATCAAACAAATCACGTGTCACAACTAAATAAGAATAAATAAAGAATCAATAACTCACGTTCTCCAACATATATACAACACTAACCAAAGACTAACAACCCAACAATTAACAAACTAAGACTTAAAGAAAACAAAACAGTAAATTAAAGAAAATAAAAGAAGCTTGATGGCTGGCAGTGAAGTCTCCTCTGTCTCCGCTCAAGGTTGGTCCATATTTATAACCAATTTCAATAAGCACAACTCGCCGCAGTTGCGCAAAGGCGGATTCTATTGGAAACAAACAGTGAATGACTTCATGACACACACGCAAGCACAGAGACAGGCACAACAGAGACAGGCAACAGCCGTAACAAGCCTAACCAACATATCATTCAGTTACAAGAGAGCGCTAAACAGTCAAAAACAGCAGCGTGAAATATACAAGCATTGAAAATATGAATGTGACCGTATTCAATGACGGTCAAGATGATTCAAAGCACTTGGATGAGCCTGGGTTAATAGTTTCTGGGGTTGTTATCTTGGAAAAACTTACCTTGGAGTGTTTGATTGGCTTATCTGAAACAAGTTTGTAATTATAAGTTATTCAATTCACTTCAAGTTTATTTGTATATCTCTTCACAGTAATTAATGTTTTAAAGCAGCTTCACAAATAGTGCACTTTATTGCATTACAGTCCAATTCAGAAAAGTTAAGCTTATTAATAACAATAACTTTACAATAACTAATTAAAGTTTTACCTTTTTTAATTATATATAATACATTTGACTGACTTCTTTGTGTTTGTCAG
Seq C2 exon
GCCACTGGGACAGTATGGAAGAGTATACCTGCATGATCCCGCGAGACACCCACGATGGAGCCTTTTACCGGGCAGTGCTTGCTTTACATCAGGATCTGTTTTCATTGGCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053196:ENSDART00000122801:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(18.0=31.4),PF0225918=FAT=PU(2.9=31.4)
A:
NA
C2:
PF0225918=FAT=FE(10.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]