RnoINT0095466 @ rn6
Intron Retention
Gene
ENSRNOG00000009615 | Mtor
Description
mechanistic target of rapamycin kinase [Source:RGD Symbol;Acc:68371]
Coordinates
chr5:165335269-165338340:+
Coord C1 exon
chr5:165335269-165335369
Coord A exon
chr5:165335370-165338224
Coord C2 exon
chr5:165338225-165338340
Length
2855 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
3' ss Seq
TCGTGTGCTTGTGTGCCTAGGTC
3' ss Score
9.06
Exon sequences
Seq C1 exon
GGGCCAGCTTCATCAGCAGTGCTGTGAAAAGTGGACTCTGGTTAATGACGAGACCCAGGCTAAGATGGCCCGGATGGCTGCTGCAGCAGCATGGGGTTTAG
Seq A exon
GTAAGGCTTCCCCGTGGGCACCTGGCCAAGCCAGGGACTCTCTCAAAGCATGAGCCGCAGTGAGGCGGGGATAACAGTCTGTGAAGTGTAAAACCCATCTGTGCTGATGTACTTACGTCTGCCATCTGTCCGTTGTCACCATGAAAACAGCTCAGTGAGCTAGCTCAGGACTGAGACGTGGGGAAGTCCAAGGACTCGGGCACACATGCCTACACTGTGTGTTAGCCACACAGTCATGTTAGGCACCCGTGGCGTGTGCCAGGCTGTGCCTTATGCTAACTGACCTCCTGTAAGTCATGGTTCCCACAGCTCCTCATAAGCATAATGTTCTAGGATGTGTCCCAGAACAGAACACGTGCTTCACTTGTGTCTGTTGTGAAGACCATAGATATGTGGCTACATGGAGATCTAGTAGGGTCCACAGCACAAAAGCATCTCCCTCCATGGTGCTCTGTCCCCTGCCAGCTGCTGTGTGGTACTGTTCCAGGGAGACATGAACAGACATCTGCTCTCCACATATAGAAAAGAACACACCGAAGTAAGGATGCCTCAAAAGTCCAGTCTGGTGGCGTGCTTTATAGCAATATGGGTCAGGGGTAACTTATAAAAGCAGACCTGACTCAAAGAGAGCCAAAAAGCCAAAAGCCCACCCCAGCTGAGTAGCAGCTCATGAAAGCCAGAACCTTGAAGTTCACTGCACAATTTGCAGACAGCTGAATAGGTTGGAGTCTCTCCCAGGCAGCTCACCTTGTCTGGAGTGTCAGCACATCTTACTGCTTGGGAGGGAGGGGTTGGTACAGATGATCAGTTTCAGGAACTTCCTGGGGCTTTTGGGTTTGTTTACTTCATGAGTTTTCAGAGCTTCCAGGAACACCCCACACCCAGCCTTCCTTTGGAAGATCTGAGTCCTAAGGAGCTTCCCTCAGAAATGGCATCTTTATCTCAGAGCAAACTGTTGTAGTGTATGTGTGGTGGGTGTGTTGCAGTCCTAGTGTCTTGTTAAAAAAACAGATTAACCGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGTCGCAAGACCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAAAAAAGAGAAAAACAAAAAATACAGATTAACCCCACAGGAAACCCCAGGGCTTTAGAAGCCCTGTGAAGGAAACAGGGATAAGTGAGTAGATTTCTTTGTGTCATGGTGGAATTTGGCGCCTTGCTGGCTCTCTTGCCTAGCCTTTCCCCTCTGCCTGTATGGTGTGCCTTTCGCCTCATGATCCATACGTTGTTAGGGCACCACACATCCCTGTGTCTCAGATAGGAGGGACGGCAGGAGGGAGTTGCTGTGTCACTTTGCTAATGTCTACATAGGTCTTTCACACATGTGTGTAACTGACTAGGGCAGTGCTGTCCCATGTGCCCACTGCCTTCCCCAACCATCAGAAACATGCTAATCACGAGTTATCTGCTCTCACTACCTGATGCTCCATAACCTCCCTGCTACTCTAGCCTGCTAAAAAGATTCTTTGTTTATTTTTTAGATGGAGTTTCATTTTGTGGCCCTGGCTATCTTGGGACTCACCGCCTGCCTCTGCCTGGTCCAGATGGGTAGAGTTTTGACACTATACCCTAACCAAGGCTTGGCAGTTCTTTTTATTTGTTTGTCCATTTTTAATGATGTCTATGTGTTTGTAGCTGTAAGCATGTGACTGCAGGTGTCAGCAGAGGCCATAGGCTCAGATCCTCCTGGAGCCAGAGTTATGGATGGTTGTAAGACTCCTAATGTAGGTTCTGGGAACCAGACTCTGCTTCTCTTCAAGAGCTGTATAAACTCTTAACCACTGGGCCATTCCTCTAGCCCCTAACTTTGCATTTCTTGATGGGACAGGAGAGGAGAGACAAGATGTGCAAAACCATCCCGTGAGCCTAGAGCAAAGTAGTAACTGCCCACTCCATGACACCCCCACCTCTACCCCACCCCTCACCCCGTCACACTGCTCCGGTGCTTTGCTCTGTAAGCCCTGGGCTTCAGCCAGAACATCTTTTAAAAACAAATTGCTTCCTGAGGAGTCATCTTTTGCTGTCTGCTTTTGCCCAGAGGCATTGGTAATGGATGAACCAATAGTTGGGAGTGGAATGCTGGAAAATGCCTTGTAAAAACAGCAGAACAGCAGCCCCGCAGTTTGCACCTAATGAGGCGGGTATCTCTTCTGCAGATGGTGTTGGCAGGGCTGACGTTGGATGCTGCTCACCATCAGGGGACGTCCACACCTCTCTGTGGTGCAGCCATTTCTTCATCCTAACATGACACAGGAGATCACTGTGCAGTGACCCAGCCCATCTCTCTGCTATAATGGATTATTTTTAGATGTTTGTGGCTGGGGTACCACCACAGTGAGACTGGCAAACAGTTTGTCAAGCCTGTTCTCTAATGTATGGTGGCCATTTTCAATTGTTTAAAGGAAAATGTAATTTCCCAGTATTTCATTGAGCTGTGAGGGCCTCACCTGTAGGGAAGAATGTGATTTTATCTAACTGGGAGAGGCTGTGGAGGGAGTTCTCAGGGTTAATGAGGGGTAGCTTTAAGCCTGTCTAATGGGCTGGCTTTGCACTTAGGCCCTGCCTCTTGTCTTATGATACTCTCTGGGGCACCAGCAGAGTCCCTTGTTTAGAAGACAGACGTCGTTTTGTTAAGTGAACCCCACAATAGATTTCAGGGCTCAGCAGGTACGTCGGGCCCTAGTCCATTTGACCTGTGTGTATCTCAAGCTGAAGGACAGTACCAATGACAGATTCGGTGGTGCCTCCAACTCAGCCAGCTGTCCACCCTGACTCTGTCGTGTGCTTGTGTGCCTAG
Seq C2 exon
GTCAGTGGGACAGCATGGAGGAGTACACCTGTATGATTCCTCGGGATACTCACGATGGAGCATTCTACAGAGCAGTGTTGGCACTGCATCAGGATCTCTTCTCCTTGGCTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009615:ENSRNOT00000014167:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0225918=FAT=PU(2.8=31.4)
A:
NA
C2:
PF0225918=FAT=FE(9.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]