GgaINT0133926 @ galGal3
Intron Retention
Gene
ENSGALG00000003339 | MTOR
Description
NA
Coordinates
chr21:4154432-4155532:-
Coord C1 exon
chr21:4155432-4155532
Coord A exon
chr21:4154548-4155431
Coord C2 exon
chr21:4154432-4154547
Length
884 bp
Sequences
Splice sites
5' ss Seq
TAGGTGATG
5' ss Score
3.49
3' ss Seq
GGATATTTGTGTCTCTGCAGGTC
3' ss Score
9.9
Exon sequences
Seq C1 exon
GGGCCAACTCCACCAGCAATGCTGTGAAAAGTGGACGCAGGTCAATGATGAAACTCAAGCTAAGATGGCAAGGATGGCTGCTGCTGCTGCCTGGGGTCTAG
Seq A exon
GTGATGTATCTTTCTAGCTGTGCTCGTGTGAGCATGTATGACAGCCAACAATGTAGAAACACAAATAGATTTAACTTTAGAGCCACAAATTATGAGAAACAGAATAATCAACACAGTCCGTTTATACCGAGACATGAAGTAGGTGTTGTTCAACACAAAAGCCCTTTGGAAAACCTGTGTTTACATATGGTGTCTCTGTGTGGTGTCAAGTAACAGAGACTGCCTTGTGGGTCTGAGTAGATAAGCAGTTACTTAACTGGTCTCTTTTAGTTTAACACTGAACATAGCTCGGACTTGAAATAAGGTTAATAGAATTTCTCTGATTTCTGGCAGACCTTTATTTAGAAATTAGAACCTTGTCCATTGAGAATTTTGGTAGGTTATCTTGATTGAGCAGGCAATCTTAAGTGGAATAAATCTATAGATGGTCCAAAAATTGCTATTGCTGATAGCTAGGTATTCACTAAAAATGCTTATAAATCACTTGTTTGCCAGTCTTTGAGAAAAGGTAATCTTCTGCTCTGTGGAACAGTAGCTCGTTTAAATGTTGTGGCAATGGCAATGGCAGTGGCTGCAGCTGAGTCACGTAAGGAAGATGTTAAAAATCCTCATGATGAATGTACCTAATCATGCAATATTAACTGAAGAGCCTTCTGACATCTGTCTTGAAGTAGAATTTGATTAATTGTAAAAGATCAAGGAGAATTGGTTCAAGCAGGTATGAGTTGTCAATTCAAATGCTGTAGGCGGAGGGAAGCAATAGAAGTTCCCAGTACCTTACTGAATTCAGGCCTAGTCACTGAGGCCTAAGCACTGTAGCATAATTCTGTTCTTATCTCACAGAGGAGGCTGTTGCATTGCTGAGGATATTTGTGTCTCTGCAG
Seq C2 exon
GTCAGTGGGACAGCATGGAAGAATATACCTGCATGATCCCAAGGGACACCCACGATGGTGCCTTCTACAGGGCTGTACTGGCTCTTCATCAGGACCTTTTCTCACTGGCTCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003339:ENSGALT00000005284:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(24.2=45.7),PF0225918=FAT=PU(2.9=31.4)
A:
NA
C2:
PF0225918=FAT=FE(9.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAACTCCACCAGCAATG
R:
GCTGAGCCAGTGAGAAAAGGT
Band lengths:
214-1098
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]