BtaINT0096228 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015325 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr16:43381202-43381797:+
Coord C1 exon
chr16:43381202-43381298
Coord A exon
chr16:43381299-43381698
Coord C2 exon
chr16:43381699-43381797
Length
400 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TGTGTCTTTCTGAATATCAGGTT
3' ss Score
7.95
Exon sequences
Seq C1 exon
AGTCCTCACCTTATGGTTTGATTATGGTCACTGGCCAGATGTAAATGAAGCCTTAGTGGAAGGGGTGAAAGCAATCCAGATTGACACTTGGTTACAG
Seq A exon
GTAAGGGCACTGGGTTACGGGTGAGGACACTGGGTTACAGGTGAGAGAACTGGGTTACAGGTAAGGACACTAGGTTAGAGATGAGGGCACTGGATTACAGGTAAGAGCACTGGGTACAGGTGAGGATGGGTCAGGTCTTGCTCATTGTCTCTCTTGGAATCATGCAGTGTTGAGAGGAGCAAGGAAGCAGGCACTATACAGTGGTAAGGAAGCAGCGATCAACCCCAAGGTCAAGACTCCATATTTTCTTCAGTTCCTTTAGAGAACTGAAGAGGGTGAACCATTTCCATGCCCAGCAGTATCTATCAAACCAGTTGCAAGAGCTGTTCATGTCTCAGAAGAATAACTGGAGTTGTTTCCACATCTCATAGGCTGCATACTGTGTCTTTCTGAATATCAG
Seq C2 exon
GTTATACCTCAGCTCATTGCAAGAATTGATACGCCAAGGCCCCTGGTGGGACGTCTTATCCACCAGCTTCTCACAGACATTGGTCGGTACCACCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015325:ENSBTAT00000020386:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0225918=FAT=PD(0.8=9.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCTCACCTTATGGTTTGATT
R:
GGTACCGACCAATGTCTGTGA
Band lengths:
188-588
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development