GgaINT0133936 @ galGal4
Intron Retention
Gene
ENSGALG00000003339 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr21:4143183-4144006:-
Coord C1 exon
chr21:4143910-4144006
Coord A exon
chr21:4143282-4143909
Coord C2 exon
chr21:4143183-4143281
Length
628 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTACTTATCCTTACTATTAGGTT
3' ss Score
8.08
Exon sequences
Seq C1 exon
AGTACTTACTCTATGGTTTGATTATGGTCACTGGCCTGATGTGAATGAAGCTTTGGTTGAAGGGGTCAAGGCAATCCAAATAGATACTTGGTTGCAG
Seq A exon
GTAAGGAACACAAAGGACTAAGACCTTGGGGATCCTAGGGGGTTCTTTTACAAGTAACCCAAGGAGATCCTTTGCTAAACACTTCTGTAGGTGAGTGGCAAAAGCAGTGTGCACGCAGTACAATTTGTAACTGACTTAACAAGAATTTTGAGTAGATACTAAAGAAGCATTCTTGTATTAATTTCTGTATTTCTATGTAGACTAATTCATAAGAATGAGAGAGCAAAGATTTAAAAACTGAAGATAGTGATCGGGCATAAAACAACACTGGGCTACTCCAGTGTAACCCAGACAGTGAGTCTATTTTGAGACTACTTTGTAGATTGAGTCTTGTAAAAAAAAAATGGCTTAATTTCTTATTTGAGTGTTACACTTCCAAGACATGACTTACTCTGTCCACGTGAAGATCCTGTAATAGTTTTGCCCAGAACATTTGTCATCTCGCTGAGTTGTTCTGCATTTTTGGCACTGTTTGGAACTTTGCTATGTTATCCTCTGATTCAAAAATGAATGATGGGCCTGTATCTCCTTTAGAGACTGTGAGGTCTCTGGCTGAGAGCAGAAAACAGCTTGTGAACTGTGTGTGTGAGCTGACAGAGATGTTTATTTTACTTATCCTTACTATTAG
Seq C2 exon
GTTATCCCTCAGCTTATTGCAAGAATTGACACACCTCGACCATTAGTAGGACGTCTCATTCATCAGCTCCTCACAGATATTGGACGGTACCACCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003339:ENSGALT00000005284:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0225918=FAT=PD(0.8=9.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACTCTATGGTTTGATTATGGTCAC
R:
TGGGGGTGGTACCGTCCAATA
Band lengths:
190-818
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]