RnoINT0095477 @ rn6
Intron Retention
Gene
ENSRNOG00000009615 | Mtor
Description
mechanistic target of rapamycin kinase [Source:RGD Symbol;Acc:68371]
Coordinates
chr5:165354437-165354954:+
Coord C1 exon
chr5:165354437-165354533
Coord A exon
chr5:165354534-165354855
Coord C2 exon
chr5:165354856-165354954
Length
322 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TGTGTCTTCCTGCACTCCAGGTT
3' ss Score
9.15
Exon sequences
Seq C1 exon
AGTCCTCACCTTGTGGTTTGATTATGGTCACTGGCCAGATGTCAATGAAGCCCTGGTGGAAGGGGTGAAGGCCATACAGATTGACACTTGGTTACAG
Seq A exon
GTGAGAACTTGGTAACAGTGAGGATGGGTCACAGTCTCTCGCTTGTCTCCTCTGGAAATCACCATGGTCACAGAAGCACAGCGAGGCCCCAGGTCCACAGCAGATATTCTCCCTTGGTTGTGCCAGGAAACTGAACGGGTGAACATCTCAAGACCTGCTAGACCAAAGTTCACTCCTGAAATCCCAGCGCATGGGAGGTAGAGGCAAAAGGATCATGACTGCCCTAGGCTACACGAGGCCTTGTCTAGAAAACAGAAGAAAGATAAAAGTCAGTCATCTTTCCTATGTCTCATGCTGCATGCTGTGTCTTCCTGCACTCCAG
Seq C2 exon
GTTATACCTCAGCTCATTGCAAGAATTGACACGCCCAGACCCTTGGTGGGCCGGCTCATTCACCAGCTCCTCACAGATATTGGTCGGTACCACCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009615:ENSRNOT00000014167:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0225918=FAT=PD(0.8=9.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCTCACCTTGTGGTTTGA
R:
CTGTGGGTGGTACCGACC
Band lengths:
196-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]