DreINT0098840 @ danRer10
Intron Retention
Gene
ENSDARG00000053196 | mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:ZFIN;Acc:ZDB-GENE-030131-2974]
Coordinates
chr8:46115820-46117640:-
Coord C1 exon
chr8:46117544-46117640
Coord A exon
chr8:46115919-46117543
Coord C2 exon
chr8:46115820-46115918
Length
1625 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ATTTGTCTTCTTTGAATCAGGTG
3' ss Score
8.88
Exon sequences
Seq C1 exon
AGTCCTGACCCTATGGTTTGATTATGGTCACTGGCCTGAAGTGAATGAAGCTCTAGTCGAAGGTATCAAGACCATTCAGATAGACACTTGGTTACAG
Seq A exon
GTAAGATCATTTCCTCCTTAAAGCCTAATTACTGAAACTTTCACAAGTTAAATAGTCCTTAACTGTTGTGTATTAATATTTAATCGTTAAATGGGACATGGTACTCACAATTAAAAAACAGCTCATAATTACAACTGTAAATAAATATTTTTTTACCCTATCCAACTAACTACCCCGACCTCAAAACTTTTAAAATTTTAACCACCTCAATAGCAACATATGTTTAACAATATTTGTACTTCATTGCTAAACTTTGTACATTATATATATGAGCAATATCACACAAGTAGCAGTGTGATATGGCTGTATAAGGTCCACCTTAAAAACCGTGACGCTTCCGTTTTTCAGCTTCTTATTCGCTTAAGAAAACACACTGAGCAAGGGCTTATTATGCGGTCCTAGCTCTATCTTGTGGATAAACAACATGAACTGTCTTTGGCCGCCAACGAGCTCTCTCAGAAATTGTAAATATTTTAAAATAGGCACTATTCTTACAAATAAACTGCATAGTTGCAATCTAAACAACTACATTCTCGACTAAAAAAAGCCTCTAAAGTACATTTTGTTGTCTAACAACAGTAATATTTGTCAAATTGTAGCGTTTCTGCTTGTTGCTGGCTGTACTGAAGGGTGATGAGGCCTTTGTGTGATGCTACTGGCAAAATATCGCGCGGCTATCAGCCAATCAGATTGAAGAACCAGACAGAACTCTTGTATAATATATATATATAAATTTGACACCTGCTATCAACTGGGCCTCATGAAGTCTTGTTATTTTACAGTTTCCCTTTCTAAATGTATGTTAGTTTAAATGGGGTAGATATATTTGGTTACACTTTGCTTTATGGTGTGTTTCGAACCCCAATTTTTTTTAAGGCTTGTCTAGGAAGGGCTTAACAACATGAAAGGGACACGCAACTCAAAAAAGTACGATTCTCTATTTATTTAAAGACCAAAAAAAACGTGTCTATCAAATAAAGTGGCAACAAAAATACAGATAATTAATTTAACAATATTAACTTAGACAAAATAATTAATTAAACAAACAAACATACAAAATAAACATATAGATCAACAAAGAATTTAATAAACTTTTCATCAGCGGCTGAACAAGACGCACACAGAATTCTAAGCCCTTCATCAGGACAACAAGATACATAGAGATTCTCAGCAAGTGCGGGTCATGCTCTCAACAGTGCAAAGATTGGGAGGATCAGTCAGACACACGCTGGAAAACAAAAGCCACCTAAACACACACTCAACAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAAAATGATAATTATAAATAAATACTAAACCGTGACAGGTGTTACTGTTATATACAATGTAACTATATATTTAACTACTGAGTAATATTGAATATTTACATATGCTTACTACATGATTAGGGTTAGAATGTGGGTTAGATGCATGTAATTATGTATAAGTACATGGCATGTGTAACAAAGCCACCTAAAACAAAGTGTTATCACATATTTAACTTAAAAGCAAGACAAAAAAGTCACTACTGAAATAAAACCTGTACATTATTGCTTTAAGCAGTACTTCTCAGATTATTTTCTTTTGATATTTGTCTTCTTTGAATCAG
Seq C2 exon
GTGATTCCTCAACTGATCGCTCGGATTGATACGCCACGTGCACTGGTGGGACGGCTCATTCACCAGCTACTCACTGACATCGGTCGCTACCACCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053196:ENSDART00000122801:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0225918=FAT=PD(0.8=9.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]