HsaINT0106396 @ hg38
Intron Retention
Gene
ENSG00000198793 | MTOR
Description
mechanistic target of rapamycin [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr1:11128454-11128951:-
Coord C1 exon
chr1:11128855-11128951
Coord A exon
chr1:11128553-11128854
Coord C2 exon
chr1:11128454-11128552
Length
302 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TGTGTCTTTTTGAATACCAGGTT
3' ss Score
7.62
Exon sequences
Seq C1 exon
AGTTCTCACCTTATGGTTTGATTATGGTCACTGGCCAGATGTCAATGAGGCCTTAGTGGAGGGGGTGAAAGCCATCCAGATTGATACCTGGCTACAG
Seq A exon
GTGAGGATACTTGGTTACAGGTGAAGGTGGCTCCAAGTCTCTCTTCTGTGTGTCTCCTCTTACAAGCATGCTGTGTTCAGTGTCACAAGGCAGTGTGTGTTAATACAGTGCTAAGGAAGTAGGGCTCGGTCCCAGTGTCAAGTGTCCATATTTTCTTTATTTTCTTTTAGAAACTAAAGGGAAGGGAATGAACCATTTCAGAGCATCAACCGAAACAAGTTAAAAGAATTGATCTTTGCCTAGAAGAATAACTAGTTGTTTCAAGTCTCATATGCTACATACTGTGTCTTTTTGAATACCAG
Seq C2 exon
GTTATACCTCAGCTCATTGCAAGAATTGATACGCCCAGACCCTTGGTGGGACGTCTCATTCACCAGCTTCTCACAGACATTGGTCGGTACCACCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198793:ENST00000361445:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0225918=FAT=PD(0.8=9.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTTATGGTTTGATTATGGTCAC
R:
GGTACCGACCAATGTCTGTGA
Band lengths:
183-485
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development