BtaINT0096241 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015325 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr16:43389871-43390710:+
Coord C1 exon
chr16:43389871-43390006
Coord A exon
chr16:43390007-43390644
Coord C2 exon
chr16:43390645-43390710
Length
638 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
CCTTTTCTTTCTTTCCCTAGCAA
3' ss Score
10.28
Exon sequences
Seq C1 exon
GTCACGGGCCTTGATGGCAACTACAGGATCACGTGCCACACCGTGATGGAGGTGCTCCGGGAGCACAAGGACAGCGTCATGGCCGTGCTGGAAGCCTTCGTCTATGACCCCCTGCTGAACTGGAGGCTGATGGACA
Seq A exon
GTGAGTCTCAGCAAGAGCCCGGGTGCTGGGGTTCACCCCCTCCCACAATGGGCATGGCCAGTTCACAGTCCTGCCCCTCTTCACACACAGAGCCCAAGACCCAGTACTCCGCTGCCACACCACACTTCCACAGGACCGCTGTGGTAGCTGGAAATCAATTTCAAGTATTTTTATTAACTAAGAAAACTCTGGTCATCAGTTTAGATCTTGATTAAAGCATTTTTCAGAATAAATAAGTATTCTAGTGACTTTTGTTAGGTTTCATGTTGAATAGCAGATGGAATTTTTACAGGATTTGCAAACAGTTGTGTTATCTCAACAGTGTCTTAGTCTACTCTTTATTCCAACCTCCTCAGAAGGTGTTTACTAATCAGAGGCGTCTTCTCTACTGCAGTTGTCACACACTCACTTGTTATCCAGTTTACATCATCTGAATCCCACTCAGCCATATAAAATGCCCCTCAGGATCAGATGCCTTGTGAACATCCACCCATTTACTCCTGAGTGTTACATTTTTGGTTTTATCTTAGTTATGGCTTTTGGGAAAATTATATTTTTATGATTAAGGGAAAGTATATCAGCCAAGTTTTTTCAAAGTTTGAAGCGCTTTTTAATCCTCCTTTTCTTTCTTTCCCTAG
Seq C2 exon
CAAATACCAAAGGTAACAAGCGATCACGGACGAGGACAGATTCCTACTCTGCTGGCCAGTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015325:ENSBTAT00000020386:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.478
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=PD(16.7=91.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCAACTACAGGATCACGT
R:
CTACTGACTGGCCAGCAGAGT
Band lengths:
190-828
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development