HsaINT0106409 @ hg38
Intron Retention
Gene
ENSG00000198793 | MTOR
Description
mechanistic target of rapamycin [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr1:11112852-11114453:-
Coord C1 exon
chr1:11114318-11114453
Coord A exon
chr1:11112918-11114317
Coord C2 exon
chr1:11112852-11112917
Length
1400 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
CTCTTTATTTCTCTCCCTAGCAA
3' ss Score
9.8
Exon sequences
Seq C1 exon
GTTACAGGCCTGGATGGCAACTACAGAATCACATGCCACACAGTGATGGAGGTGCTGCGAGAGCACAAGGACAGTGTCATGGCCGTGCTGGAAGCCTTTGTCTATGACCCCTTGCTGAACTGGAGGCTGATGGACA
Seq A exon
GTGAGTATCATCAAGTGCCTGGGAGCTGAGCTCAGTGGCTCACACCTGTAATCCTAACATTTTGGGAGGCCAAGGCAGAGGAGTTGCTTGAGGCCAGGAGTTCGAGACCAGCCTGGGCAACATAGTAAGACCCCTTTCTGCAAAAACTGAAAAAATTAGGCATGTATTAGTCTGTTCTCACGCTGTTATAAAGAACTGCCTGAGACTGGGTAATTTATAAAGGAAAGAGGTTTAATTGACTCACAGTTCTGCTTGGCTGGGGAGAACTCAGGAAACTTACAATCATGGTGGGAGGGGAAGCAAACACTTCCTTCTTCACTTGGGGGCAGAAGAGAGAAGTACAGAGTGAAGGGGAGAAAAGCCCCTTATAAAACCACCAGATCTCATGAGAACTCAGTCACTATCACGAGAACAGCATGGAGGAACCATCCCCATGATCTAATCACCTCCCATGAGGTCCCTCCCACAACACATGGGGATTACAATTCGAATTGCAGTTCAAGATGAGATTTTGGGTGGGGACACAGCCAAACCATATTAAGGTGGGTACAGTGGCACATGCCGGTGGTCCTACCTGCTCAGGAGGCAGAGGCAGGAGGATCACCTGAGCCTGGGAGGTTGAGGCACAGTGAGCTATGATCATGCCACTGCTGCACTCTAGCCTAGGTGACAGCGTGAGACCTTGTCTCAAAAAAATAAAAAAATAAAAAATTTAATTTTAAAAATAAAAGAAAACAAATAAAAAATAAAATCAAGTGTGTGGAAGCTGGGGTTGGCAGCCTCCCAAATTAGCAATATCCAGCACATAACATTTTACAAACCTATGCCCCTTCAAGCCTGCAGCCTGGGATACATTGCAGAGCTATTGCATTACATTTGCACAGAGTAACTCTGACACCTGGAAAAGAACTTCAAGTATTTTTATTAACTAAAACAGAAAATGCCATTATCAATTTAGATACTAAAATATTCTTCAGTATTAACCAAGTATCCTAGTGATTTTTCTCTGGGCTTTATATAGAGTAGTAAGCTGAAATTTTAATAAGAAACGCAAACAGTTATGATTTGGGACAGCAGTATCTTCATCTACCCTTTGTTCTGCCACCTTAGGGGATGTTCACCAAAAGAGCTTCTAATCCATTGAAATTAAATCATACTTTGACCTTATATTATCTGTATTACATTGTCTAAGTCCAAATCAACAGTATAGAGTGTCCCCCTGGGTTTCACATCCCATGCTAATACCCACCCACTTATTCCTGAGTAATATGTCTGTCATCTCTTTTTTTGGGGCTATAGCTTTACGAACAATTATATTTTTATGACTGGAAGAAAATAACCAAGTTTCTTTCAAGTCAAAATTTGAAGCATGTTTCAATACTCTTTATTTCTCTCCCTAG
Seq C2 exon
CAAATACCAAAGGCAACAAGCGATCCCGAACGAGGACGGATTCCTACTCTGCTGGCCAGTCAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198793:ENST00000361445:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.487
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=PD(16.7=91.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGATGGCAACTACAGAATCA
R:
GACTGACTGGCCAGCAGAGTA
Band lengths:
193-1593
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development