GgaINT0133948 @ galGal4
Intron Retention
Gene
ENSGALG00000003339 | MTOR
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:HGNC Symbol;Acc:HGNC:3942]
Coordinates
chr21:4135280-4135894:-
Coord C1 exon
chr21:4135759-4135894
Coord A exon
chr21:4135346-4135758
Coord C2 exon
chr21:4135280-4135345
Length
413 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
GTTCTTTTATTTTCTTGCAGCAA
3' ss Score
9.91
Exon sequences
Seq C1 exon
GTGACGGGCCTTGATGGCAATTACAGAATCACCTGTCACACAGTGATGGAAGTCCTGCGCGAGCATAAGGACAGTGTCATGGCTGTGCTAGAAGCCTTTGTATATGATCCATTATTGAACTGGAGGCTGATGGACA
Seq A exon
GTAAGTTATCCTGATAAAACAGTGATGACAGTGGGAGAGTCATCAATCTCATGAACGTTATATTTGAATAAGAAATCCGGAAGCACAAAACTTAATGTCTGTTTGAAGGCAGTCTGATTGTACTGTTGATTTGCAAGTGCTATTTCTTGCACATGGTTCTAGGGATTGTAGTGTCAACTAACCACACTGACTAAAACCCTTTTTGCCCTTAAACAGAGATGCAGAACTAAGCTACATGCAAAACGGTTTGAGTTGTCCTTGAGTTAGCTGTCATCAGGAGATTAAAAGCTATTTCAGGTGACATTTGGAGAAGGAGAAAGTCAGTCAAGCATATACTGTATGTGGATGGGCAAATTTGCTGCGAACCACTGAAACTCGAGTTCATCTTTTTTAGTTCTTTTATTTTCTTGCAG
Seq C2 exon
CAAATACAAAGGGCAATAAACGTTCACGAACAAGAACAGACTCCTACTCAGCCAGTCAGTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003339:ENSGALT00000005284:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.565
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=PD(16.7=91.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGATGGCAATTACAGAATCACC
R:
TGACTGACTGGCTGAGTAGGA
Band lengths:
190-603
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]