DreINT0098853 @ danRer10
Intron Retention
Gene
ENSDARG00000053196 | mtor
Description
mechanistic target of rapamycin (serine/threonine kinase) [Source:ZFIN;Acc:ZDB-GENE-030131-2974]
Coordinates
chr8:46081537-46081808:-
Coord C1 exon
chr8:46081673-46081808
Coord A exon
chr8:46081603-46081672
Coord C2 exon
chr8:46081537-46081602
Length
70 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
GATGCTTCTCCGTCTTACAGCAA
3' ss Score
9.39
Exon sequences
Seq C1 exon
GTGACGGGACTGGATGGTAACTACCGTATCACATGCCACACAGTGATGGAGGTGCTCCGGGAACACAGGGACAGTGTCATGGCTGTGCTGGAGGCCTTTGTCTATGACCCGTTACTCAACTGGAGGCTTATGGACA
Seq A exon
GTGAGTACACAACCTTTACTTGTTCAAAACCATATCAGAGTCATGCAACTGATGCTTCTCCGTCTTACAG
Seq C2 exon
CAAACACTAAAGGAAATAAGCGATCCCGGACCAGAACTGACTCCTATACTGCAGGACAGTCTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053196:ENSDART00000122801:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.609
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=PD(16.7=91.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACGGGACTGGATGGTAACT
R:
TCTGGTCCGGGATCGCTTATT
Band lengths:
170-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]