RnoINT0095490 @ rn6
Intron Retention
Gene
ENSRNOG00000009615 | Mtor
Description
mechanistic target of rapamycin kinase [Source:RGD Symbol;Acc:68371]
Coordinates
chr5:165366478-165367499:+
Coord C1 exon
chr5:165366478-165366613
Coord A exon
chr5:165366614-165367433
Coord C2 exon
chr5:165367434-165367499
Length
820 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGC
5' ss Score
5.94
3' ss Seq
TTCATGCTCTCTCTTCCTAGCAA
3' ss Score
8.75
Exon sequences
Seq C1 exon
GTTACCGGTCTCGATGGCAACTATAGAACCACATGCCACACAGTGATGGAGGTGCTTCGGGAGCACAAGGACAGTGTCATGGCTGTGCTAGAAGCCTTTGTCTATGACCCTCTGCTGAATTGGAGGCTGATGGACA
Seq A exon
GTAAGCTTCAAATATATTCTCTATAAGTTCCAAGCCAGCTTATGCTGTTTAAATTAAATACATAGATACATATGTGTCCCTGACAATTACAGAGCAGTTTCTGGGGGCTGGAGAGGGATTTCAAACCATTTTACGGGCTAGAGAGCGCTCCAGCCAGCTGTTTAATGAGCATGGTTTTCTGGATGAACTGTGCCTCAGTGGTTTCTCTTTGTTTGGCTGTCAGTAGAAAGCTAGCATTTTAGTGAGAAACACAAATAGTTGTGATTGAGACAGCAGTGTGGCCTCTTCTCTACTCGATGGAGGATTCTAACTGTCAAGAGGTCTCTAGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCAAGCGCAAGGCCCTGGGTTCAGTCCCCAGCTCCAAAAAAAAAAGAACCAAAAAAAAAAAAGGTCTCTAATAGTCTGTGAGTAACCAGCACTGATCTGTCTGTGTCAGGCCTGCAGTGGCTGATGGTCTGAGTAAACCAGCACTGACTTGTCTGTGTCAGGCCTGCAGTGGCGAGCATCCAGATTGCAGATTCAGCATTTCAGCTTTTTGAAAAAAATACATTTTAGCTGGATGGGGGGTGGTACACGCCTTTAATCCCAACACTTGGGAGGCAGAAGCAGGATGTTCTCTTGTGAGTTCAAGATCAGCCTGGTCTACAAAAAAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAAATTATGTTTTTGTGATCATAAGAAAATACCTTTCCAACCAGGCTTCTCTCAAGTCACAGTCTAAGCGCTTCCTAATTCATGCTCTCTCTTCCTAG
Seq C2 exon
CAAATGCCAAAGGCAACAAGCGGTCCCGAACCAGGACAGACTCCTATTCTGCAGGCCAGTCAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009615:ENSRNOT00000014167:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.435
Domain overlap (PFAM):
C1:
PF0045422=PI3_PI4_kinase=PD(16.7=91.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACCGGTCTCGATGGCAAC
R:
TGACTGGCCTGCAGAATAGGA
Band lengths:
198-1018
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]