BtaINT0097104 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021151 | MYH10
Description
Bos taurus myosin, heavy chain 10, non-muscle (MYH10), mRNA. [Source:RefSeq mRNA;Acc:NM_174834]
Coordinates
chr19:28691777-28693460:-
Coord C1 exon
chr19:28693248-28693460
Coord A exon
chr19:28691939-28693247
Coord C2 exon
chr19:28691777-28691938
Length
1309 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
3' ss Seq
ATCCTGACACTGCCTGTCAGGTG
3' ss Score
5.76
Exon sequences
Seq C1 exon
GTTCATGAACTTGAGAAATCCAAACGGGCCCTAGAGCAGCAGGTGGAGGAAATGAGGACCCAACTGGAGGAGCTGGAAGATGAGCTCCAGGCTACAGAAGACGCCAAGCTTCGCCTAGAGGTCAACATGCAAGCCATGAAAGCCCAGTTTGAGAGAGACTTGCAGACCAGGGATGAGCAGAATGAGGAAAAGAAGCGGCTGCTCATTAAACAG
Seq A exon
GTAGATCTTAGAGGTGTGGCCCCCAGAACGGCCCTTGTTTGTGCTCAAAGACCAGTTTTTGGCCAGTGATATTTGCGTTGGAACATAGTAGCTGGAGGAAATTTATTGGGTCATATAACTTTATCTTTAAAATATAATGTAATTGGTTTTGATTTCCAGGAAATTTATTGGGTCATATAACTTTATCTTTAAAATATAATGTAATTGGTTTTATTTCCTATTTCTCAGATTATCATTACTACTTAAAAGCCAGTGGGCTGTCCAGGGACATGTAGTCAGGTTCAAGTTCTGGGAGTCTTACAAGTGTCAGTAAAGGGAAGAATCAGTACATACCTGACAAGGTGATTCAGAATATTCTGAAGGTCAGATTGCATGTCCTCTTTAAACCACTCTAAAGGGAAAACTCTAAGTATTTACATTTTTGTTATTTGAAAACATTGCTTGGGCACTTACAATTTATATACTTTTCTGAGTGCATTTAAATTTCTAATTTAAAATTTTAAAGTGAAACATTCCCAAGGGCTTCCCTGATAGCTCAGCTGGTAAAGAAACCACCTGCAATGCGGGAGACCTGGGTTTGATCCCTGGGTTGGGAAGACCCCTTGGAGAGGGGAAAGGCTGCCCACGCCAGTATTCTGGCCTGGAGAATTCCATGGACTGTATAGTCCATGGGGTTGAAAAGTCTCGGACATGACTGAGCGACTGTCACTTTAACATTCCCTTGGAGTTCATGGTATCAAGTCTTGGATCTGGGACACTTTCTTATTTTTGGTCCACTAACATTTTATTAGTCATTTATTGCTAGATAACAGGTTAGCTCAAGCTTAGTGACTTAAAACAGCACACATTAAATGAGTTTCTGTGAGTTGGGAATTCTGAATCAGCTTATTAGCAGGGAGCATCCATCATCTGAAGGGCTAACTGGGGCTGGAGGGAGTGCGTCCAAGCTGTTTGCCCATGTGGTTGACACGTGGGCCCCTCTGCTGGGGCTGGGGTGTCCCTGTTGTGGGGCAAGTGGGGAGCTTCCCTAGGAGCTTGTCTTGTGCCTTCCAATCTCGTTGCATCACCTGGACTAGGAGCTTGAGATCAGGGATTCTGCCTCCTTACACACTCTCGCCATGGTCAGTCGGTCAATGGAAATGATTTGTACCAGGTGGAGATGTTTATAGTTTTCTCTGTACAAATTCAGCTGCTAATAATAATAACTGCTTGGAGGCAGAGAGCCCCCCTTCTGAGTAAGCCGAGCCCCCATGGGCCTGTTCTCTGTGTGAGGATACCGGGTCTGATGTATCCTGACACTGCCTGTCAG
Seq C2 exon
GTGCGGGAGCTTGAGGCAGAGCTGGAGGATGAGCGGAAACAGCGGGCCCTGGCTGTTGCCTCGAAGAAGAAAATGGAAATAGACCTGAAGGACCTGGAGGCTCAAATCGAGGCAGCTAACAAAGCAAGGGATGAAGTGATCAAGCAGCTCCGCAAACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021151:ENSBTAT00000028188:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.789 A=NA C2=0.148
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.2=100),PF115593=ADIP=PD(60.7=95.8)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGAAATCCAAACGGGCCC
R:
CGGAGCTGCTTGATCACTTCA
Band lengths:
355-1664
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development