GgaINT0127264 @ galGal4
Intron Retention
Gene
ENSGALG00000001183 | MYH10
Description
myosin-10 [Source:RefSeq peptide;Acc:NP_990805]
Coordinates
chr18:1708436-1709410:-
Coord C1 exon
chr18:1709198-1709410
Coord A exon
chr18:1708598-1709197
Coord C2 exon
chr18:1708436-1708597
Length
600 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
TAAATGCCTTCATCTCACAGGTG
3' ss Score
9.84
Exon sequences
Seq C1 exon
GTCCATGAGCTGGAGAAATCCAAGCGAACTTTAGAGCAACAGGTTGAAGAGATGAGAACTCAACTTGAGGAACTGGAAGATGAACTACAGGCCACAGAAGATGCTAAGCTTCGTTTGGAGGTGAACATGCAAGCTATGAAAGCCCAGTTTGAGAGAGATCTGCAAGCCAGAGATGAGCAGAATGAAGAGAAAAAGAGGATGCTGGTCAAACAA
Seq A exon
GTATGTCTGGTTTACTGCACTTCATTGCACTTCATTGAGGGAAGGGTGTGAGGCTCTGCTGCCAAAGTTTTGTGGCTTCCTTATTACTAGAAAATAAAATCATTTGCTTAAAGACCCCACCCTATAAAAAATTCCTAGCATTGATCTTACTGAATAACTGAGAATCTCTAATATATGGATCTTGTGGAAACAAACAATAGCCTTGGAAGGCTTCTGAAGTTTTACAATGCAAAAATTGTCATTAACTTACATAGGATGGGAGCCCTTGATGGTAACGTAAGGAGCAAAACTTGATTTTTATATACAAAAAGAGAAATAACTTACGATCTAAGTAGCTGAACAGATGAAACGGGAATGCTTCTAACAGTGAGTTATTGCCTGTTTTCTTTTCTGTCAGTTCAGAGATCTCTGCTTCCAATTTGTGGATTTGGTTTTTGCCATCTGCAGCGCCTTCCCCTGTAGCTTGCATTCTGTAGTCTCTTCCAATCAAGTAACATTCATTCCGTTGTGCAAAGGCCTTTTGGATTCTCAGACCATTAGTTAGGACTTTGTGTTTGTTCCATTGCTGGGACAGATCTGCTAAATGCCTTCATCTCACAG
Seq C2 exon
GTGCGAGAGCTGGAGGCAGAGCTGGAGGATGAGCGCAAGCAGAGGGCTCTTGCTGTAGCAGCCAAGAAGAAAATGGAGATGGATCTGAAAGACCTGGAAGGTCAGATAGAAGCTGCAAACAAGGCTCGAGATGAAGCCATCAAACAGCTGCGTAAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183:ENSGALT00000023397:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.887 A=NA C2=0.496
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(11.9=100),PF115593=ADIP=PD(60.9=94.4)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTGGAGAAATCCAAGCG
R:
TGATGGCTTCATCTCGAGCCT
Band lengths:
350-950
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]