DreINT0099745 @ danRer10
Intron Retention
Gene
ENSDARG00000000103 | myh10
Description
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
Coordinates
chr6:7487944-7489017:+
Coord C1 exon
chr6:7487944-7488156
Coord A exon
chr6:7488157-7488855
Coord C2 exon
chr6:7488856-7489017
Length
699 bp
Sequences
Splice sites
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
3' ss Seq
ATGAGTCCTCTTGTCTTTAGGTG
3' ss Score
9.13
Exon sequences
Seq C1 exon
GTCCACGAGCTGGAGAAATCTAAGCGGACTCTGGAGCAGCAGGTGGAGGAGATGCGCACTCAGCTGGAGGAGCTGGAGGACGAGCTGCAGGCCACTGAAGATGCCAAGCTGCGTCTGGAGGTCAACATGCAGGCCATGAAGGCCCAGTTTGACCGAGACCTGCAGGCCAGAGATGAGCAGAACGAGGAGAAGAAGAGGGCGCTGGTTAAACAG
Seq A exon
GTCTGTGACATGTACAGTTTACCAATTAAAAAACTGTGATTGAAAATAATAATTCAGAAGGATTTTATTTCATTTATTTATTTAATAGTTACTGGCGTCAGTTCCTATGAACTTTTATTTTTTAATGTTAAACATTATTCTTTCATTTGGCTTTCTAAAATTGTTAAACAGATGAAGTTTTTAGTTGTTGGATGGCTTTTTAGAGTTGAAGATTTGATCTATAATTTGAATTGAAATTTTTACTTGAATTGAAAACTATCTGATGTTCCGAGGGTATATTTTTAAGAATGGACATGATATTTTATGCTAAAACTCATTAGGCTATTAAAATCATGTTTAATTCTGTAATTATATCAAAACTTTATTTTTGATGAGTAATCAACATTGCTATGAACTTGGTTTGTACACGATTTAAAGATGATTTTATTATATTCTTTTGTAATCCTAAGATTCTAAATTGCCAAATATTGTCCTATCCTAACAAAATCTCACTTATAAAAAGGGACGCTTATGTCTGTTTTTTTAGTTCTGGCTCACATTTATAAATTGTAATTGAACATTAATATTCTTGTGTTTCTGTTTCCTTTGAGAAACAACAATAAATGTGTGACAGCCTTCAAGAGTTTTCCTACAAGATAAACCTGTGTGTTTCTGTGATCTGGTTCAGTTTTTTTGATCCATGAGTCCTCTTGTCTTTAG
Seq C2 exon
GTGCGTGAGATGGAAGCAGAGCTGGAAGATGAGAGGAAGCAGAGAGCTCTTGCTGTTGCTGCAAAGAAGAAGCTGGAGATGGACCTGAAAGATGTGGAAGCTCAGATTGAGGCTGCAAACAAGGCCCGCGATGAAGCCATCAAACAACTACGAAAACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000103:ENSDART00000151114:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.915 A=NA C2=0.574
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.2=100),PF115593=ADIP=PD(61.6=97.2)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCTGGAGAAATCTAAGCGG
R:
CTTCATCGCGGGCCTTGTTT
Band lengths:
344-1043
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]