RnoINT0096328 @ rn6
Intron Retention
Gene
ENSRNOG00000002886 | Myh10
Description
myosin heavy chain 10 [Source:RGD Symbol;Acc:71000]
Coordinates
chr10:55395534-55396683:+
Coord C1 exon
chr10:55395534-55395746
Coord A exon
chr10:55395747-55396521
Coord C2 exon
chr10:55396522-55396683
Length
775 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CAGTCCACACTGTCCTTCAGGTA
3' ss Score
5.59
Exon sequences
Seq C1 exon
GTCCACGAGCTGGAGAAGTCCAAGCGGGCCCTGGAGCAGCAGGTGGAGGAGATGAGGACCCAGCTGGAGGAGCTGGAGGACGAGTTGCAGGCCACTGAGGACGCCAAACTCCGCCTGGAAGTCAACATGCAGGCCATGAAGGCCCAGTTTGAGAGGGACCTGCAAACCAGAGATGAGCAGAATGAAGAGAAGAAGCGGCTGCTGCTCAAGCAG
Seq A exon
GTAGGTGGGGGAGGCATGGCCTGCAGAGCCTGGCTCGTGCGTTCTCAGCCGGCCCAGCAGTCGGCCCTGTAGCTGGCACTGGGAAGCATTAGCTGCAGGACATGTTGAGTCTGGCAGTAAGTAGTTTAGATTTTCTCTTTCTCCAATGTCACTGCTGCTTAGCTAGGGTGTCTGTGAAGCCATCGGAGTACTCAGGGTATGAGACTAGGGGAAAACCTGTCTCTCAGATGGGGAGACACTGCAGGTGCCCATCATTCATATATCATGGCCTCCTTAAATCACCCCACCCCCTTCGGAAGGCTGGGATCAAACCTAGGACTTTGCACATACTAGGTAAGCACTCTACCACTGAACCACCTTAAAGGGTTCCTCATGAGAGAAGAGGGTTGATGTTTAATTCTTTGTGTGTGCTTGTTTGCTTGGTTTGGTTCTTGGGAGACAGGGTTTCTCTATGTACTCAAACAGAGTTTAATCCCAAGTGTTGGAATTAAAGACATAAAAAGAATCTTATGATTGTCTTGTGCCTCCTATCTTTCTGATTTAGAGTCACCTGTCACTGTGAGCCTAAGGTCTTCCTCCTTCGGTCCCCTAGTAGCTACCAGCAAGCGTAGCCTATCCCACGTAGTGGTTGCCAAGGCCTTCTGAACTAAACCCAGTCCTGGAGCTTTTGTTAGTAATACATGGGGACTTGTTGGTATCAGGAACCTCTGCAGTGACGAGCTCCCCTAGCCAAGGAACTAGAGGCCAGGATAATGCAGTCCACACTGTCCTTCAG
Seq C2 exon
GTACGGGAGCTCGAGGCAGAGCTGGAGGATGAGCGGAAGCAGCGGGCACTTGCTGTGGCTTCAAAGAAGAAGATGGAGATAGACCTGAAGGACCTGGAGGCTCAGATCGAGGCCGCCAACAAGGCCCGGGATGAAGTGATCAAGCAGCTTCGCAAGCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002886:ENSRNOT00000065895:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.789 A=NA C2=0.148
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.2=100),PF115593=ADIP=PD(61.6=97.2)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACGAGCTGGAGAAGTCC
R:
CTTGATCACTTCATCCCGGGC
Band lengths:
356-1131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]