GgaINT0127264 @ galGal3
Intron Retention
Gene
ENSGALG00000001183 | Q789A6_CHICK
Description
NA
Coordinates
chr18:1695463-1696437:-
Coord C1 exon
chr18:1696225-1696437
Coord A exon
chr18:1695625-1696224
Coord C2 exon
chr18:1695463-1695624
Length
600 bp
Sequences
Splice sites
5' ss Seq
CAAGTATGT
5' ss Score
7.44
3' ss Seq
TAAATGCCTTCATCTCACAGGTG
3' ss Score
9.84
Exon sequences
Seq C1 exon
GTCCATGAGCTGGAGAAATCCAAGCGAACTTTAGAGCAACAGGTTGAAGAGATGAGAACTCAACTTGAGGAACTGGAAGATGAACTACAGGCCACAGAAGATGCTAAGCTTCGTTTGGAGGTGAACATGCAAGCTATGAAAGCCCAGTTTGAGAGAGATCTGCAAGCCAGAGATGAGCAGAATGAAGAGAAAAAGAGGATGCTGGTCAAACAA
Seq A exon
GTATGTCTGGTTTACTGCACTTCATTGCACTTCATTGAGGGAAGGGTGTGAGGCTCTGCTGCCAAAGTTTTGTGGCTTCCTTATTACTAGAAAATAAAATCATTTGCTTAAAGACCCCACCCTATAAAAAATTCCTAGCATTGATCTTACTGAATAACTGAGAATCTCTAATATATGGATCTTGTGGAAACAAACAATAGCCTTGGAAGGCTTCTGAAGTTTTACAATGCAAAAATTGTCATTAACTTACATAGGATGGGAGCCCTTGATGGTAACGTAAGGAGCAAAACTTGATTTTTATATACAAAAAGAGAAATAACTTACGATCTAAGTAGCTGAACAGATGAAACGGGAATGCTTCTAACAGTGAGTTATTGCCTGTTTTCTTTTCTGTCAGTTCAGAGATCTCTGCTTCCAATTTGTGGATTTGGTTTTTGCCATCTGCAGCGCCTTCCCCTGTAGCTTGCATTCTGTAGTCTCTTCCAATCAAGTAACATTCATTCCGTTGTGCAAAGGCCTTTTGGATTCTCAGACCATTAGTTAGGACTTTGTGTTTGTTCCATTGCTGGGACAGATCTGCTAAATGCCTTCATCTCACAG
Seq C2 exon
GTGCGAGAGCTGGAGGCAGAGCTGGAGGATGAGCGCAAGCAGAGGGCTCTTGCTGTAGCAGCCAAGAAGAAAATGGAGATGGATCTGAAAGACCTGGAAGGTCAGATAGAAGCTGCAAACAAGGCTCGAGATGAAGCCATCAAACAGCTGCGTAAGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183:ENSGALT00000023397:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.887 A=NA C2=0.463
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.2=100),PF115593=ADIP=PD(61.1=97.2)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTGGAGAAATCCAAGCG
R:
TGATGGCTTCATCTCGAGCCT
Band lengths:
350-950
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]