BtaINT0097131 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015988 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_001095597]
Coordinates
chr25:14247651-14250275:-
Coord C1 exon
chr25:14250167-14250275
Coord A exon
chr25:14247783-14250166
Coord C2 exon
chr25:14247651-14247782
Length
2384 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
GGCTGACCCTCTGTGTGCAGGTG
3' ss Score
8.32
Exon sequences
Seq C1 exon
GGCCTTTGCCAAGAGGCAGCAGCAGCTGACGGCCATGAAGGTGATTCAGAGGAACTGCGCCGCCTACCTCAAGCTGCGGAACTGGCAGTGGTGGCGGCTCTTCACCAAA
Seq A exon
GTGAGTGCATCCTCATCCCAAGCCCCCTTCCACCCACCTCTCCCGAGTCCTGCGTCTTCCCTGGGACGCTGCCCACGTGGGACTGGAGGTGGTGGATAGCAGGCTTGCAACTGAGAGCTCAAAACCAAACCTTCCCCATTGGCGATTCTCTGGGCTTGAGAAGAGCCCCCTCTTTGGCATGTGGGTTACAGCCGTGACCTTAACCCAGACCCAGAGCACTTCCATCACCACAATGCTATGCTAATGCTAAGTCGCTTCAGTCGTGTCCGACTCTGTGCGACCCCATAGATGGCAGCCCACCAGGCTCTGCCATCCCTGGGATTCTCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGAGAAAAGTGAAAGTGAAGTCGCTTAGTCGTGTCCGACTCTTAGCGACCCCATGGACTGCAGCCTACCAGGCTCCTCTGTCCATGGATTTTCCAGGCAAGAGTACTGGAGTGGGGTGCCATTGCCTTCTCCGTCCATCACCACAAGGATCCCTCCTATTGCCCATTTATAGCTCTGCCCACTTCCCTCCACAGTCCCGGCAAGCACAAATGTGTTCCCTATTTCTGTACTTTTGTCATCTCAAGAATATTATGTTAACGGGGTCCCGTAGTTATGTCACTGGGGCTTCCCTGATAGCTCAGTTGGCAAAGAATCTGCCTGCAATGCGGGAGACCCTGGTTCAATTCCTGAGTGGGGAAGACCTGCTGGAGAAGGGATAGGCTACCCACTCCAGTTGTTAGGCTTCCCTTGTGGCTCAGTTGGTAAAGAATCCGCCTGCAATGCAGGAGACCTGGGTTCAATCCCTGGGTTGGGAAGATCCCCTGGAGAAGGGAATGGCTACCCACTCCAGTATTCTGGCCTGGGGAATTCCATGGACTGTATAATCCATGGGGTCTCAGAGTCGGACACCACTCAGCGACTTTCACTTTGTCACAAAGCATCATTCTCTGGAGAGCCCTCCATCCAGCGTGTTGTGCGTATCCACTGTTTGTTTCTCTGGGTACAGCTTGGTCTTGCAGCATTGCTGGCTGTTACGAGTCTATTGGGCAAAGACTTGCTCTGTGGGACAGACACAGCTTCCTCTTAGGTGCCCTTGAGTCTGTTGATGGGCACAAAGCTTTTCCACTGAGTGACTATGTGTTGAATGGCCACTGTGCACCAGGCGCGTGTGGAGGGCTGGGGATACCCTGGCTTCATGAATATTCTAGGTGAGTGGAGGAGTAGGTGATAGGTAATCGCAGGAAATGACACCCATGGCAGACTGGGGTCAGTGCAGGAAGGAAACTGCAGTGTATCAAACACGGGTTCCTCTAGTGCCGGGTGGGGCTTGAACACAAGGAGTTAGGAGTCAGCCTGCTGAAGAGCAGTGAGGGGAAGCTGCTTTTTGGAAATGTTCATTCCCATCAACCCAACTTCTGGAAGCTCCTAAAAAAACCACCCGCAATAAAGAAAATAAAAAATGAAGGGCATTCATTTACAAGAGCAAAATTTCAATGCCCAGCCCTGGCAGACTGACTCATAACAGCTCATCCATCAATGGGATACTTTTCAATCGCTAAAAATGTTGATATTTAAAAATCAAGTTGTAACACTGACGTGACCGCAGGGGTGACAATTATCCTGTCGTTTTTAGTAATAAAAGCGGCACGTAGGGAATTCCCTGAAGGTCCAGTGGTTAGGACTCCATGCTTTCCCTGCAGAGGGCCTGGGTTCCATCTCTGGTCCGCAAACTAAGGTCCCTCAAGCCTCATGGCATGGCAAAAAAACTTTCTTAATTTAAAAAAACATTTTTTTTAAGTACATGTAACGCTGGGCAGTGTGGTCTCGGTGTATTTTTTTAGTGTGCAGGACAAAGGGCTAGAAGGAGATGCTGATAGGGCCAGTAACGGGAGGCAGGATGTGGGGGACTTTCCTCTCCTTTTCTCTTCGGAAGGAAACACAGCAGTTTGTCAGCAGCAGTTCTCACTCAGGATGGGACTAAATGGGGGGAGGCGAGACTTCTGTCACTTTGCACCTCTTCCTGTTGCTCTAGGATTTTTCAGTCTCGGCATATTGGTTGATATTGGCATATGTTGATATTTTGGGATGGGTAATTCTGTGTCACGGAGGCCGTCCTGAGAATTCTAGAATGTTGAGCAGCATTCCTGGCCTCTACGCACCAGATGCCAGTAGCATCCCCCCGCCCACCTAGTTGTGACAGCTAACACCGTCCCCAGAAACTGCCAAATATCCTGAGGGGCTGCAGGTGGAATAAAATTGTCCCTGGCCGAGAACCATTGATTTACTTACTATGAGAGTGTATCCCTTGTGCCATGGAGACAACTGATGGGCTGACCCTCTGTGTGCAG
Seq C2 exon
GTGAAGCCCCTGCTGCAGGTGACTCGGCAGGAGGAGGAGATGCAAGCCAAGGAGGATGAGCTGCAGAAAACCAAGGAGCGGCAGCAGAAGGCCGAGAGCGAACTCAAGGAGCTGGAGCAGAAACACTCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015988:ENSBTAT00000035455:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.750
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(14.3=8.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]