MmuINT0103266 @ mm9
Intron Retention
Gene
ENSMUSG00000018830 | Myh11
Description
myosin, heavy polypeptide 11, smooth muscle [Source:MGI Symbol;Acc:MGI:102643]
Coordinates
chr16:14220248-14221945:-
Coord C1 exon
chr16:14221837-14221945
Coord A exon
chr16:14220380-14221836
Coord C2 exon
chr16:14220248-14220379
Length
1457 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
GTCTGTGTACATACATGCAGGTA
3' ss Score
6.91
Exon sequences
Seq C1 exon
GGCCTTCACCAAGAGGCAGCAACAGCTGACAGCCATGAAGGTGATCCAGAGGAACTGCGCTGCCTACCTTAAGCTCCGCAACTGGCAATGGTGGCGGCTCTTCACCAAA
Seq A exon
GTGAGTGATTGGCCCTACGCCTTCCAGACCTCCTCCACTTCCGCAGCCCCAAGCCCTACTGGGATCTAGATGGGATGGAGGTGCTCCAAAGCGGCTCTGGATCCGAGGCCTGAAGGCAGACCTCTCATGCAGACCTGCGAAGGTCCACGCCTTTGGGTGGGTTGCAGTCATGACTTAAGGCAGATCAAGGTGTTTCTGTCACCTCAAGAATCCCTCTTATCACCCTGGTGTAGAAACCCACTTCTCTCTGTGGCCCCTGGGAAAGTATTTATTGAGTACCTGCTGTATGCCAGGCGTGTGCTAGGCATCATGGTCTCTGGCTTCGTGGACACGCCAGCCAACTAGAGAAGCAGATGATAATGAACGGCACAGAAACCCCGCTAAGTGTGCGAAGGCAGGCAACCATGGAGTCCACCGGCTCTGGGTGCCAGACAAGCTGGGGAAGAAGCCTGGGGGGAAGCTGCTTTCTGCAAATGTTCCCATGAACCCACGTTCCAAGGAACTATCCCGAGAAAACCATCTTCCATAATAACAAGCAGGATTCCACAGCCGCTGTGACAGTGGCCACATTTCCTTAGCAGACTCATTAGTTCAACTGTTAATGGGATGGTGGTGGGGAACCAACAAGTAAAAAGGATGCCTTTCTAAGACCAAAGTTGTAAAACATGAGCTACGAAACCTGTAATTTCTAAATGATGAATCAGAAAGCTAGGATTCAGTTCAATACTTGCCTTTTTGTTCTCTTTTTTGAGACAGAGTGTCCATGTAGCTCTGGCTGGTCTAGAACTCTCTATGTTAATCAGGCTGATTTTGAACCCACAGAGATCCTCCTGCTTCTGTCCTGTCCCACGAGTTCTGGGATTAGAGCCATGCACCACTGTAACCAACATTCAAGACTATTTTTAAATGGTGCATAGGGTGCACTGTTCTAACAGGGACCATAACCATGGAACAGCAGTGAAGGATGGATGAATAGCCCACCTTCAACTCCTTTGCTTCTTTCTCTTTTCATTTTGTTCTAATAAACCGGTCTAATGAGAGGCCTGTGGATTCAGGGTGTAGCTCAAGTGCACAGCACTGGGTTCAATCCCCAGCACTGAAAAAGAAAGAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAATGTAAGGTCCCTCACATTCCTCACATCCCTCACATTTCCCATGCTAATAGTTTGGGCTTATCTGACTTGTAGAAGATATTCCTAGAAATTGTTCTAGAATATAAGCCATATCCCTGGCCTCTACCTACTGATACTCGTAGAATCTTCCATCCCAGTTTTGACATCTGATTATATCCCTGACATTGCCCAGTGTCACCTAGATGGGTGTTGGTAAGATCATCTGGGAACCAACCTAATATTTGATGAATATCGCTTCCTTTGGCCAAAACACTAATAATGTCTGTGTACATACATGCAG
Seq C2 exon
GTAAAGCCATTGCTCCAGGTGACACGGCAGGAGGAGGAGATGCAGGCCAAGGAGGAGGAGATGCAAAAGATCAAGGAGCGGCAGCAGAAGGCAGAGACTGAGTTGAAGGAGCTGGAGCAGAAGCACACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018830-Myh11:NM_013607:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.705
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(14.3=8.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACCAAGAGGCAGCAACA
R:
CTGAGTGTGCTTCTGCTCCAG
Band lengths:
238-1695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: