GgaINT0015066 @ galGal3
Intron Retention
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7640816-7641848:-
Coord C1 exon
chr14:7641740-7641848
Coord A exon
chr14:7640948-7641739
Coord C2 exon
chr14:7640816-7640947
Length
792 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
GATTTTCTTTTTGTTTTCAGGTG
3' ss Score
11.43
Exon sequences
Seq C1 exon
GGCCTTTGCCAAGAGACAGCAACAGCTGACTGCAATGAAGGTTATCCAAAGAAATTGTGCTGCTTACCTGAAGCTGAGGAACTGGCAATGGTGGAGACTGTTCACCAAA
Seq A exon
GTGAGTAACCACTGTCTGTGAATCTCAGCTTTACAAAAGTAATGAACTGCACAAGATAACAAGTCATGTCAGGCACCCTCCCTGCTCCAGTTCTCCACGGATGACAGCAAGGGCTTCATTAGCTTCACAGAAGTTTGGATTAAAAGATACACTGGATATTCTTATAACACTATTAACTTTAAAGTTAGTTTTATCTTGGGATGAAAAACTAATTAAGCAGAGATCTAGGTAAGATTTAGTATGACTATTTTAGTTGCTCAAAATGAAATAATTTCACACAGGTTGATAATGAGAACAAAAACCAGAATTTTGTGAAACGGGCAGTAATGTATCTGTGTGGACTCAGGAGTTCCCTAACTTCCCACTAGCCACTCAAACAAATTAAGTGTTTTCCCAATAGAGAGGCTTGGTGGGGTTTTTTGTTTTGTTTTGTTTTGTTTTTGTTCGTTTGTTTTTTTGTTTTCCTTCTTCAAGAATGGCGTTCTATGCAGCAGTTATAGCCTCTGTACATTCTCAATGCACAAAACCAGTCTTCTAGTTCTTCAGCAAGTGATACTGTTGAAGTTAGAGGTGCTCACAAGACTGCAAGAATTAATGCAGAAATGGTTATGAATACTGCCAGGGCTTGCTGGTTTAAAGATGTTTACACCATGTGTAGTTAGACATTATTTGCCCACTACCTGAGAAGCAGCAGGTAGTGCTACCACCAGCACCAGTCATCCTGACACCATTAAGTACTGTCTTCAGTAAAATAAGCACTAGTATGATTCTTGATTTTCTTTTTGTTTTCAG
Seq C2 exon
GTGAAACCACTGCTACAGGTCACCCGCCAAGAGGAAGAAATGCAGGCCAAGGATGAAGAATTGCAAAGAACTAAGGAAAGACAACAGAAAGCTGAGGCTGAACTGAAGGAGCTGGAACAGAAACACACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000033605:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.500
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(14.3=8.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTTGCCAAGAGACAGCAA
R:
TGGGTGTGTTTCTGTTCCAGC
Band lengths:
239-1031
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]