MmuINT0103266 @ mm10
Intron Retention
Gene
ENSMUSG00000018830 | Myh11
Description
myosin, heavy polypeptide 11, smooth muscle [Source:MGI Symbol;Acc:MGI:102643]
Coordinates
chr16:14220155-14221852:-
Coord C1 exon
chr16:14221744-14221852
Coord A exon
chr16:14220287-14221743
Coord C2 exon
chr16:14220155-14220286
Length
1457 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
GTCTGTGTACATACATGCAGGTA
3' ss Score
6.91
Exon sequences
Seq C1 exon
GGCCTTCACCAAGAGGCAGCAACAGCTGACAGCCATGAAGGTGATCCAGAGGAACTGCGCTGCCTACCTTAAGCTCCGCAACTGGCAATGGTGGCGGCTCTTCACCAAA
Seq A exon
GTGAGTGATTGGCCCTACGCCTTCCAGACCTCCTCCACTTCCGCAGCCCCAAGCCCTACTGGGATCTAGATGGGATGGAGGTGCTCCAAAGCGGCTCTGGATCCGAGGCCTGAAGGCAGACCTCTCATGCAGACCTGCGAAGGTCCACGCCTTTGGGTGGGTTGCAGTCATGACTTAAGGCAGATCAAGGTGTTTCTGTCACCTCAAGAATCCCTCTTATCACCCTGGTGTAGAAACCCACTTCTCTCTGTGGCCCCTGGGAAAGTATTTATTGAGTACCTGCTGTATGCCAGGCGTGTGCTAGGCATCATGGTCTCTGGCTTCGTGGACACGCCAGCCAACTAGAGAAGCAGATGATAATGAACGGCACAGAAACCCCGCTAAGTGTGCGAAGGCAGGCAACCATGGAGTCCACCGGCTCTGGGTGCCAGACAAGCTGGGGAAGAAGCCTGGGGGGAAGCTGCTTTCTGCAAATGTTCCCATGAACCCACGTTCCAAGGAACTATCCCGAGAAAACCATCTTCCATAATAACAAGCAGGATTCCACAGCCGCTGTGACAGTGGCCACATTTCCTTAGCAGACTCATTAGTTCAACTGTTAATGGGATGGTGGTGGGGAACCAACAAGTAAAAAGGATGCCTTTCTAAGACCAAAGTTGTAAAACATGAGCTACGAAACCTGTAATTTCTAAATGATGAATCAGAAAGCTAGGATTCAGTTCAATACTTGCCTTTTTGTTCTCTTTTTTGAGACAGAGTGTCCATGTAGCTCTGGCTGGTCTAGAACTCTCTATGTTAATCAGGCTGATTTTGAACCCACAGAGATCCTCCTGCTTCTGTCCTGTCCCACGAGTTCTGGGATTAGAGCCATGCACCACTGTAACCAACATTCAAGACTATTTTTAAATGGTGCATAGGGTGCACTGTTCTAACAGGGACCATAACCATGGAACAGCAGTGAAGGATGGATGAATAGCCCACCTTCAACTCCTTTGCTTCTTTCTCTTTTCATTTTGTTCTAATAAACCGGTCTAATGAGAGGCCTGTGGATTCAGGGTGTAGCTCAAGTGCACAGCACTGGGTTCAATCCCCAGCACTGAAAAAGAAAGAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAGACAATGTAAGGTCCCTCACATTCCTCACATCCCTCACATTTCCCATGCTAATAGTTTGGGCTTATCTGACTTGTAGAAGATATTCCTAGAAATTGTTCTAGAATATAAGCCATATCCCTGGCCTCTACCTACTGATACTCGTAGAATCTTCCATCCCAGTTTTGACATCTGATTATATCCCTGACATTGCCCAGTGTCACCTAGATGGGTGTTGGTAAGATCATCTGGGAACCAACCTAATATTTGATGAATATCGCTTCCTTTGGCCAAAACACTAATAATGTCTGTGTACATACATGCAG
Seq C2 exon
GTAAAGCCATTGCTCCAGGTGACACGGCAGGAGGAGGAGATGCAGGCCAAGGAGGAGGAGATGCAAAAGATCAAGGAGCGGCAGCAGAAGGCAGAGACTGAGTTGAAGGAGCTGGAGCAGAAGCACACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018830:ENSMUST00000090287:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.709
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(14.3=8.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCACCAAGAGGCAGCAACA
R:
CTGAGTGTGCTTCTGCTCCAG
Band lengths:
238-1695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types