RnoINT0096354 @ rn6
Intron Retention
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:831275-833194:+
Coord C1 exon
chr10:831275-831383
Coord A exon
chr10:831384-833062
Coord C2 exon
chr10:833063-833194
Length
1679 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
GGCTGTATGCACACACGCAGGTA
3' ss Score
3.14
Exon sequences
Seq C1 exon
AGCCTTCACCAAGAGGCAGCAACAGTTAACAGCCATGAAGGTGATCCAGAGGAACTGCGCTGCCTACCTTAAGCTCCGCAACTGGCAATGGTGGAGGCTCTTCACTAAA
Seq A exon
GTGAGTATCGGCCTTATGCCTTATAGACCTCCTCCACTTCCCCAACCCCAAGCCCTACTTGGATCTAGATGTGGGAAAGGAGGTACTCCAAAGTGTCTGGATCTGAGACCTGAAGTCAGACCTCACATGCAGACCTTTGAATATCTACCCTTTTGGGTGGGTTACAGTTATGACTTAAGGCAGATCAAAGTATTTCTGTCACCTCAAGAATCCATCTTATTGCACTTCTCTCTGTGGCCCCTGACAACTACATTTCTGCCCCCACTCCCTTCTGAATTTCCACTGTCTCAAGATTTAAATGGACTCCAATGGCATGGTGCCTTTTACAATTGGTGTTTTTGCTCAGAATGATTAAGTAGGAAGCCCACACTTGTTTGAATTAGTAGTTCATTTTATTCCTTGCAGCTTGCACAGCCTCTGGGTACCACTGGCTCATCACTGGCTGTACAAAGACACATTTTCTGGCTGTAAAAGTACATATCTCCCTTATATGCCCTTGAGTGCGTGAGTTCTTTCCCTGAGAAAGTATTTATTGAGTATCTGCTGTATGCCAGCCAACTAGAGAAGCAGACGATAATGAATGGTCACAGAAACAGATAATGGCAAGCCCTGCTAAGTGTGCAAAGGCAGGCAACCACAGAGTCCTTTGGCAGAGGCTCTGGGTGCCAGTCAAGCTGGGGAAGAAGCTTGAGGAGAAGCTACTCTCTGAAAATGTTCCCACGAACTCACATTCCCAGGAACTACCCTGTGAAAACCATCTTCTGTAAGGAAAAGCAGGATTCCAGGGCATCCTGCACAGCCACTGTGACAGTGGCCACGTTTTCTTCACAGACTCATTGGTTCAATTGCTTATGGGGATAGTGGTGGGGAACCAAACTTGTAAAGCACAAGCTAAGAGACTTATGATTTTTAAATAATGAAACAGAAAACTAGGCATTCAATTCAATACTTGCCTTTTTGTTCTCTTTTTTGAACCAATTTCTATGTAGCTCTGGCTTGCCTAGAACTCTCTATGTATATCAGGCTGACCTTGAATCCACAGAGATCCTTCTGCTTCTGTCCCCCAAGTGCTGGTATTAGAAGCAGGTACCACCATAGCCAACCTTCAACACTATTTTTAAACAGGAGAGTGACGACTACATGATATGCACTATTCTGACAGCGGACATAACTGTGAAAAAGCAATGAAGGATGAACCACCTTCGACTCCCTTACTTCTTTCTTTTTTCATTTTGTTCTAATAAACTGGTCTAATGAGAGGCCTGTGGATTCAGGGTGTAACTCAGTGATAAAACACACAGCCCTGAGTTCAATCCCCAGCTCTGCAAAAATAAGAAACAAAGAAAAAGAAAAAGAAAAAAGAAACAAAAAAAAGAAAGGGAGAAAAAAAACCCAACAATGTAAGATCCCTCACATTTGCCCTGCTAATAGTTTGGTCTTAGCGATTCTGACTTGTAGACGACATTCCCAGAAATTGTTCTAGACTATAAGCTGTATCTTTGGCCTCCTCTACCCACTGATGCAGTAGAATCTTCCATTCCAGTTTTGACATCTGATTCTATCCCTGACATTGCCCAGTGTCATCTAGATGGGTGTTGGTAAAATCTTCTGTGATAAAATTTGATGGCAATGGCTTCTTTTCGCCAGAACACTAACAATGGCTGTATGCACACACGCAG
Seq C2 exon
GTAAAGCCGCTGCTCCAGGTGACGCGGCAGGAGGAGGAGATGCAGGCCAAGGAGGAGGAGATGCAGAAGATCAAGGAGCGGCAGCAGAAGGCAGAGTCTGAGCTGAAGGAGCTGGAGCAAAGACACACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880:ENSRNOT00000084608:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.705
Domain overlap (PFAM):
C1:
PF0061222=IQ=PD(14.3=8.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCACCAAGAGGCAGCAAC
R:
TGAGTGTGTCTTTGCTCCAGC
Band lengths:
238-1917
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]