BtaINT0097132 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015988 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_001095597]
Coordinates
chr25:14247353-14247782:-
Coord C1 exon
chr25:14247651-14247782
Coord A exon
chr25:14247560-14247650
Coord C2 exon
chr25:14247353-14247559
Length
91 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
TCCCCGCCCCCTGCCTGCAGCTG
3' ss Score
11.48
Exon sequences
Seq C1 exon
GTGAAGCCCCTGCTGCAGGTGACTCGGCAGGAGGAGGAGATGCAAGCCAAGGAGGATGAGCTGCAGAAAACCAAGGAGCGGCAGCAGAAGGCCGAGAGCGAACTCAAGGAGCTGGAGCAGAAACACTCGCAG
Seq A exon
GTACCGGCCCGGGAGCCTGGCTGACGCTGCAGAGGGCAGGCCGCCTGCCCCCATGGGGCTCACCACCTGTCTCCCCGCCCCCTGCCTGCAG
Seq C2 exon
CTGACAGAGGAGAAGAACCTGCTGCAGGAGCAGCTGCAGGCAGAGACGGAGCTGTACGCCGAGGCCGAGGAGATGCGGGTCCGGCTGGCAGCCAAGAAGCAGGAGCTGGAGGAGATCCTGCACGAGATGGAGGCCCGCCTGGAGGAGGAGGAAGACCGGAGCCAGCAGCTGCAGGCAGAACGGAAGAAGATGGCCCAGCAGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015988:ENSBTAT00000035455:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.507
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(8.8=18.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAGCGAACTCAAGGAGCTG
R:
ATCTCGTGCAGGATCTCCTCC
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]