GgaINT0015067 @ galGal3
Intron Retention
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7640325-7640947:-
Coord C1 exon
chr14:7640816-7640947
Coord A exon
chr14:7640532-7640815
Coord C2 exon
chr14:7640325-7640531
Length
284 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
TATACGTTTTATCTCCATAGCTT
3' ss Score
8.95
Exon sequences
Seq C1 exon
GTGAAACCACTGCTACAGGTCACCCGCCAAGAGGAAGAAATGCAGGCCAAGGATGAAGAATTGCAAAGAACTAAGGAAAGACAACAGAAAGCTGAGGCTGAACTGAAGGAGCTGGAACAGAAACACACCCAG
Seq A exon
GTGACTGACAGATCTAAGCCTCTCCGAAATATTAGCCAATCTCTCACCATTTCCAGAAGCTATTAGGATAAAGAGGTCTGTTTTCTTTGTACTTACGATTGTATTCATAGCAATGGTCCAGAATGAAAGTTCAGTGCAAACTCCCAGTAACTTCAGCAGAAGTCTAGTATTTGCAGAAAGACCTGTGGTACAGCTACCTATGTGTATATTATGACTAGTAGAAAGACACTGTGGGGACAACTTGCAGTCTCAATTTTAACTGCCTATACGTTTTATCTCCATAG
Seq C2 exon
CTTTGTGAAGAGAAGAACCTCCTCCAGGAGAAACTTCAGGCAGAAACTGAACTGTATGCTGAAGCTGAAGAGATGAGAGTCCGTTTAGCTGCGAAAAAGCAAGAGCTGGAAGAGATTCTGCATGAGATGGAGGCCAGAATTGAGGAAGAGGAGGAACGCAGCCAACAGTTGCAGGCAGAAAAGAAAAAGATGCAACAACAAATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000033605:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.435
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCAAGAGGAAGAAATGCA
R:
CTTTTCTGCCTGCAACTGTTGG
Band lengths:
292-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]