RnoINT0096355 @ rn6
Intron Retention
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:833063-833487:+
Coord C1 exon
chr10:833063-833194
Coord A exon
chr10:833195-833280
Coord C2 exon
chr10:833281-833487
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
GATCCTCGCCCTGCATGCAGCTG
3' ss Score
7.03
Exon sequences
Seq C1 exon
GTAAAGCCGCTGCTCCAGGTGACGCGGCAGGAGGAGGAGATGCAGGCCAAGGAGGAGGAGATGCAGAAGATCAAGGAGCGGCAGCAGAAGGCAGAGTCTGAGCTGAAGGAGCTGGAGCAAAGACACACTCAG
Seq A exon
GTACAGAAGGTGTGCAGCGAGCTGTGGGAGCAGCACAGTCGAGGGCTCAGCCCACGTGCTAACCCTGATCCTCGCCCTGCATGCAG
Seq C2 exon
CTGGCTGAGGAGAAGACCCTGCTGCAGGAGCAGTTGCAGGCAGAGACAGAGCTGTATGCTGAGGCTGAAGAGATGCGGGTCCGCTTGGCAGCGAAGAAGCAGGAGCTAGAGGAGATCCTCCATGAGATGGAGGCCCGCTTGGAGGAGGAGGAGGACCGGAGCCAACAACTGCAGGCTGAGAGGAAGAAGATGGCTCAGCAGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880:ENSRNOT00000084608:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.705 A=NA C2=0.478
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(10.1=21.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAAGGCAGAGTCTGAGCTG
R:
AGGATCTCCTCTAGCTCCTGC
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]