GgaINT0015067 @ galGal4
Intron Retention
Gene
ENSGALG00000006520 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_990605]
Coordinates
chr14:7573813-7574435:-
Coord C1 exon
chr14:7574304-7574435
Coord A exon
chr14:7574020-7574303
Coord C2 exon
chr14:7573813-7574019
Length
284 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
TATACGTTTTATCTCCATAGCTT
3' ss Score
8.95
Exon sequences
Seq C1 exon
GTGAAACCACTGCTACAGGTCACCCGCCAAGAGGAAGAAATGCAGGCCAAGGATGAAGAATTGCAAAGAACTAAGGAAAGACAACAGAAAGCTGAGGCGGAACTGAAGGAGCTGGAACAGAAACACACCCAG
Seq A exon
GTGACTGACAGATCTAAGCCTCTCCGAAATATTAGCCAATCTCTCACCATTTCCAGAAGCTATTAGGATAAAGAGGTCTGTTTTCTTTGTACTTACGATTGTATTCATAGCAATGGTCCAGAATGAAAGTTCAGTGCAAACTCCCAGTAACTTCAGCAGAAGTCTAGTATTTGCAGAAAGACCTGTGGTACAGCTACCTATGTGTATATTATGACTAGTAGAAAGACACTGTGGGGACAACTTGCAGTCTCAATTTTAACTGCCTATACGTTTTATCTCCATAG
Seq C2 exon
CTTTGTGAAGAGAAGAACCTCCTCCAGGAGAAACTTCAGGCAGAAACTGAACTGTATGCTGAAGCTGAAGAGATGAGAGTCCGTTTAGCTGCGAAAAAGCAAGAGCTGGAAGAGATTCTGCATGAGATGGAGGCCAGAATTGAGGAAGAGGAGGAACGCAGCCAACAGTTGCAGGCAGAAAAGAAAAAGATGCAACAACAAATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000010534:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.435
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCAAGAGGAAGAAATGCA
R:
CTTTTCTGCCTGCAACTGTTGG
Band lengths:
292-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]