BtaINT0097136 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015988 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_001095597]
Coordinates
chr25:14242372-14244200:-
Coord C1 exon
chr25:14244029-14244200
Coord A exon
chr25:14242585-14244028
Coord C2 exon
chr25:14242372-14242584
Length
1444 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAA
5' ss Score
7.09
3' ss Seq
CGGTGATCTGTCCCTGGCAGGCT
3' ss Score
7.15
Exon sequences
Seq C1 exon
TGCGGCTGAAGAAGGAGGAGAAGAGCCGGCAGGAGCTGGAGAAGCTCAAGAGGAAGCTGGATGGGGAGGCCAGCGACTTGCACGAGCAGATCGCAGAACTGCAGGCGCAGATCGCCGAGCTCAAGATGCAGCTGGCCAAGAAGGAGGAGGAGCTGCAGGCGGCCCTGGGCAG
Seq A exon
GTACAAGGCCGCCGCGGGCAGGTCCAGTGTGTGCGTGTGCCCCAGGGCCCCTGCCGGCCTGCAGGGGGGGCGCCTGGCCCTCCTCCTCCTCCAGGCAGGCCTCCATCTCACGTGAAGTGGCCCCGCCCTGGCCGCCCAGGTGCCTTGCGGGAACCTCGCCTTTGGCCTTCTTCTCTCCCTACCAAGCTCATCCTCCCTACTGCCACTGTGCCCGCCTCTTGGGTGCCCATCCTTCGTCATCTGCACCCCAGCCCTGGATTTCTGGTTGCACAAAGAAGCTGTTCCATGGGCACCACAAACACCACGTGTCTGAGGCTGGGAGGACCCTGCTGTCCCCGGCTGTCTCCCTCTGAGGCCCCTCTTTATGTGAACACCAGTCTCCTCCCGAGCTTTTGCCCCTTCTCTTCCCGCCCAGGGTACAGCAGACTCGGCCCGTTCCATGTGGGGTGTCCCCCGCCCACTTTTCTGCACCCCCTTCTCCCAGCTCGGAGCTGGGGGTGCTCTAACAGCTTCCCCGGGGGCATTAGAGCGGCGACTCACAGTTACTTACCTGCTCCCCGTGTGCTGAGCTCTGCTCGAGCGGTGTCTTTACCAACGCCTGGCCGGATGTGCTGCTGCACCTCCAGTCACTGAGGAGGAAGCTGGGCCAGGGGAGGTGAAGGAACCTGGGCCAGTCACCTGGCTTTGGAGAGACGGGCTGGGAGTCGCTTTCTGGTTGGTCCCCTGGCCAGCTCTCTCTCAGCTGGTTTGTGCCAGGCGACAGCGCTAGGGTGATGGGCCACCTCGTGTCTTCCCTCCACTGGTCCCCTTCCATCCATCGTGGACGAAACTGGAAGCAGCCCCACCATGGTCAGGAGGGAGCTTCCTTCCATTCTTTCAGATCAAGGCTCCCCCTCTCCCACCCTGACCAGATCAAGGCTCCCCACCTCCCACCCTGACCCGCAGTCACCGTCTCCCCTGGTGTTAACATCCCCACCCCCAACAAGCAGTGCCTGGCCAAGCACTTTGCAAATGGAAGGAAGAATCAACCAGTAGTTACTGGGGAGGAACACTTGCCTGACACTCAGAAAGCATCTGTTGGGCTCCTGCTGGGGACAAGGCACCATGCTGGGACAGTGCAAAGCACTCTCTGTGTCTGTGTCTCTGTTTCTGCCTCACTTTCACACACACACACACACACACACACACACACACACACACACACGTGCAGCACGACCTGTTTTCTTACATCAGCCCTCGGAAACTACAGCCTGCATGAACCTCCAAGCAGTCCAACATGGCAAGAAGGGGCCTTGTGTGTCTCGGGACCTGAATGGAACATGTTCTGATATCTGTGGAACCCAAACGACTGCTTCCAGAAAACCATTTTTGGCGACCTCGTGAGATGAACAGCAGGGGGCCTAGGGACCCCAGGGTCTTAGTTCCGGTGATCTGTCCCTGGCAG
Seq C2 exon
GCTGGACGACGAAATGGCTCAGAAGAACAATGCCCTGAAGAAGATCCGGGAGCTGGAAGGTCACATCTCAGACCTCCAGGAGGACCTGGACTCAGAACGGGCCGCGAGGAACAAGGCGGAGAAGCAGAAGCGGGACCTGGGGGAGGAGCTGGAGGCGCTGAAGACAGAGCTGGAAGACACGCTGGACAGCACAGCCACCCAGCAGGAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015988:ENSBTAT00000035455:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.448 A=NA C2=0.986
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(30.4=77.6),PF0157614=Myosin_tail_1=PU(2.9=43.1)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCTGAAGAAGGAGGAGAAG
R:
CTTCCAGCTCTGTCTTCAGCG
Band lengths:
346-1790
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]