GgaINT0015071 @ galGal3
Intron Retention
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7637380-7638569:-
Coord C1 exon
chr14:7638398-7638569
Coord A exon
chr14:7637593-7638397
Coord C2 exon
chr14:7637380-7637592
Length
805 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
ATGAAACTCTTTCTTTCCAGGCT
3' ss Score
8.13
Exon sequences
Seq C1 exon
TGCGACTGAAAAAGGAAGAGAAGAGCAGACAAGAACTGGAGAAAATAAAGAGGAAGTTGGAAGGAGAGTCAAGTGATCTGCATGAGCAAATTGCAGAGCTCCAGGCACAAATTGCTGAGCTGAAGGCACAGCTAGCCAAAAAGGAGGAAGAGCTGCAGGCTGCTCTAGCCAG
Seq A exon
GTATTTGCTCCTGAATCTATGCACAAGTTAAAAATCCCAGGCTGAAACATATATCTCTTTCCTTTCCAGAGTTTCCACCCAGTACATCCTGCCTGCCTTTCTGCTGAAGATACTTACACTATTGTTTTTTCATAAACAGCTTAACCTTATGCCCAGACAGCAATGAAAACACTTCTTCCCAGTGGCCTTAGTAGCACTGCCAAGTAAAGAATAAAAAGTAGCAACATAGTTGATAAGCAAAAAGCATAAATTGCTTAAGTGTCTGACTTTAACCCATTCCAGTCATTGGGGATTTTCTGTCTAAATTTAGGAGGGAGAACAATCAACCAAAACTTTCATTGAATCTGTTGATTTGGCATCTCTAGTCATTGTGTCCTGGCAAAGTATAGCTGTCAGATCCTGTTTGCATGAGTCCTAGCTCTTTCTTGCACAGGTTTCAGGTGGGTTCATACAAACATAAAGCGGGACTTTCAGAACTCCCTGGTCATATCTTACTGCTCACAATTACATTATTTAAATTCCACTGTGAACTCTAGAATATGGAAACACTAGATACACAGTATAAACATATAGTATTCACAAATTCATGTACAGTATTTCACACACTGTCTTAATAGATAGAGGGAGACGTCACAATACGTAGATAAACCACGGTTCCTACTGAAGTGATCATGTACAACTAAATATTTCCAGCTTATTAAGATTAAAATTGTATCTTGAATATAAACCTTTAATCTCCATGTAGTGATGTCCTGAATGTGAAATGATACTTTTTAATATAGAAAATGAAACTCTTTCTTTCCAG
Seq C2 exon
GCTTGAAGATGAAACTAGTCAGAAGAACAATGCCCTCAAGAAGATCCGAGAATTGGAATCTCACATCTCTGATCTCCAGGAAGACTTGGAATCTGAGAAAGCTGCAAGAAACAAAGCAGAAAAACAGAAGAGAGACCTAAGTGAAGAGCTGGAGGCTCTTAAGACAGAGCTTGAAGATACTTTGGATACCACAGCCACCCAGCAAGAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000033605:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.603 A=NA C2=0.972
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(23.8=100),PF093045=Cortex-I_coil=PU(47.2=72.4),PF0157614=Myosin_tail_1=PU(2.9=43.1)
A:
NA
C2:
PF0003816=Filament=FE(29.7=100),PF093045=Cortex-I_coil=PD(51.7=63.9),PF0157614=Myosin_tail_1=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAGACAAGAACTGGAGA
R:
GGGTGGCTGTGGTATCCAAAG
Band lengths:
351-1156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]