RnoINT0096359 @ rn6
Intron Retention
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:837325-840448:+
Coord C1 exon
chr10:837325-837496
Coord A exon
chr10:837497-840235
Coord C2 exon
chr10:840236-840448
Length
2739 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
CAGTGCTCCATTTTGGGCAGGCT
3' ss Score
3.26
Exon sequences
Seq C1 exon
TGAGGCTGAAGAAAGAGGAGAAGAGCCGGCAGGAGCTGGAGAAACTCAAGAGGAAACTGGAGGGTGATGCCAGTGACTTCCACGAGCAGATCGCTGACCTGCAGGCCCAGATTGCAGAGCTCAAGATGCAGCTGGCAAAGAAAGAGGAAGAGCTACAGGCAGCTCTAGCCAG
Seq A exon
GTGTGCTACGTGTGTATATGTGTGACTGTGTCTGTGTGTGTTCATGTGTTTCCAGAGGCCCTCTGCTTTTTAAGATGGCCACAGGTCCTTGGCATGGATGTCAACTGTCAGACCTGGTTTCCTGCAAGCCTTCCGAACTATGCTATCACCCATTCTCTTCCTTCCAAACTCATATTCTCTGCAATGCCCCTACTCCAATAGGACTGCAGCATCTGGGGTACCCAGAATTTCTGATTTGGACCCCAGTTCTGAATTCCCAGTCACCCATTGAGCCCATCTCTTTAGGTATCATACACATCACATGTCTAGGCTGGAGTGGCTTTCATCATCCCTGTTCTACTCTCTCTCAAATCTTTCTGTGCATGCTGGTTTCTTCCCCAGCTCTGTCCACACGAGTCACATCTCCATCTTAGTCCCTCTGCTCTTCCTTTTTCCTGGCATCCAGTTGGCTTCAAGCCAGGGATATCACAGTTGTGAGTGACATTTACCAATCTATTCCTGGAAGCATCCTCAAGACCCCTAACCAGGCTTTCTCACTTCTTTGGAGACTTAAGGAGGTACCTGCTCACACTGCTCCTAAGAGGCTAAGCCGGGACTCAATCCTTGGGCTTTATGATTTGTCTCCTGGCTCACCTCTCTTTTCTAATTTGGAGTGCATGGCAAAGCTTGGATGACTAATGAAAAACTGTTGCTCAGGGACATCAATCAATGGCAGAACAGTAGCTGGGTCACCCAGAAAGAGCCTGATCTCTCTGGCAGTCACTGGGTGTGAGCACAATAACAGCAGAGCTCCTCATCCTGGGCCTCCCATTCATCATCATCAAGTGGAATAGCAAAGCTGGATGTGATGTAATTCCAGCACTCTGAGGCTGAGGCAAGGGGCTCATGGTTTTATGCATATTCTGGGTTCCATAGGCAAGATTCTGTCTTAGACCATAAAACAGATGTTAGCTCCACCTTGCACCAGGACAGAGCTCTACCTCTACTGAAGTCCTGCAACTGTCGTGTGGTGTCACTCATGTCCCACCCACAATCACCACCTCTGCTGTAATGGGGAGCTGACTTTTTTTTTTATGTTTTCATTATTGTTTGAGATAATTACATCATTTCCTCCCTTCCCCTTTCTCTGTTCAACTCCTATCATACACCCCCTTGCTTTCTTTCTAATTCATGGCCTCTCTTTTATTGTTGTTATGTATATAAGTGTATCTGTGTATATGTATGTCTTCTTAAGTATATAATACAAGCTGTGGTTTTTATACCACTAAGGACACATAACAAGGATAAGCCATGGACCCAGTCACTGGCTGAGCAAATGAAAGAACAGAAATGTTTGGTGTTCACGAAGCATTTTTCAAAGGTTGGAGTATGACTCAGGGCAGAGGCCTCACCTGGCATAGAGGCACAGTACCACAAAAAGTATATGCATACACACTTTCTTAGTTAGGGTTTTACTTCTGTGAACAGACACCATGACCTAGGCAACTCTTATAAGGACAACATTTAATTGGGGCTGACTTACGGGTGCAGAGGTTCAGTTCATTATCCTCAAGGCAGGAACATGGCATTATGCAGGAACTATCCAGACAGGCATGGTGCTGGAGAAGCCGAGAGTTCTACATCTTCATCTGAAGGCCACTAGTAGAACACTGGCTTCCAGGCAGCTAGGGTGAAGGTCTTAAAGCCCACACCCACATGACGCCACACCGTCTAATAGTGCACAAGCATGGATATACAAACATATCCTTTTGGGGGCTTTCCTGGAGCCCACTATGTAATTCAGATTAACCTTGAACTCTCAGCCACTCTCCTGCCTCCCCAGTTTTGAGATGATTGACATGCCTTAGCACACCCAGCTCCTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTCTATTTTTTATTTTCCTGGGGCAGGATCTCACTATGAATCTCAGCCTGGCCTGGAACTTGAGGTTTTTCTGCCTCAGTCATCCCAGGACAAGGATCACAGATGTTTGCCACCATGCCTTGTTTCAGCCTTTTTATATATCCACAATCCATCCTATGTGGATCTCCAACATCAAAAGAAGTACCTGGCTTTGGGAGATGTGGGAAGAATGAGTTCTGACATCTTTGGTGTCAGAGATACCATCCCCTAAGCCTGACGACCAGGGTTGGGGGCTCAGGAGAGATGAAGACCTAAATTCAATACAATACCATTTTTACAGGGACTGGGTCAAGATCTCCAGGGGCGCTGATCTCAAGATTTATTTTCCTTACACATTTAAATACAGTAGAACTTACGACTTTTACAATAAGAATGAATTCTATTGGCTAGTAAACAAAGCTCAGGACTAGGGTCTAGAAAAGCAGCTGTGATAAGCATACGGATTAACTTTATTGGTGGAGGGTGCAAAGTACATGGAGAATACGTGGAGACTCTTAGGAACGAGTTCTCTTCACTGCAGCACCAGGGACCAAATAGTGCTCAGGATGTAAGGGATCCTAATAGAAAAGCAAAGAATCACTAGGCTAACTGACCACTTTTCAGTCTGGCATTTTAGATGACTAGGTGTCATTCATTTCCTTCTGTTGAAGAAACCAGGCCTGCATAATTGACAATCCTTGTTTTTTAATGCCTTCTTTAAACCAAGCCTCCTACACATTGGGACACAGGAGTCAGACCCAGAATAGTTTTTGGTGACATTAGATAGCCTTGGCTGTGGGGGTCTTAATCCTCAGTGCTCCATTTTGGGCAG
Seq C2 exon
GCTCGATGAAGAGATCACCCAGAAAAACAATGCCCTAAAGAAGATTCGAGAGCTGGAGGGCCATGTCTCAGACCTACAGGAGGACCTGGACTCAGAGCGAGCTGCTAGGAACAAGGCTGAGAAACAGAAGCGAGACCTGGGGGAGGAACTGGAGGCGCTCAAGACAGAGCTGGAAGATACACTGGACAGCACAGCTACCCAGCAGGAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880:ENSRNOT00000084608:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.293 A=NA C2=0.889
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(29.5=74.1),PF0157614=Myosin_tail_1=PU(2.9=43.1)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]