GgaINT0015071 @ galGal4
Intron Retention
Gene
ENSGALG00000006520 | MYH11
Description
myosin-11 [Source:RefSeq peptide;Acc:NP_990605]
Coordinates
chr14:7570850-7572039:-
Coord C1 exon
chr14:7571868-7572039
Coord A exon
chr14:7571063-7571867
Coord C2 exon
chr14:7570850-7571062
Length
805 bp
Sequences
Splice sites
5' ss Seq
CAGGTATTT
5' ss Score
7.51
3' ss Seq
ATGAAACACTTTCTTTCCAGGCT
3' ss Score
6.72
Exon sequences
Seq C1 exon
TGCGACTGAAAAAGGAAGAGAAGAGCAGACAAGAACTGGAGAAAATAAAGAGGAAGTTGGAAGGAGAGTCAAGTGATCTGCATGAGCAAATTGCAGAGCTCCAGGCACAAATTGCTGAGCTGAAGGCACAGCTAGCCAAAAAGGAGGAAGAGCTGCAGGCTGCTCTAGCCAG
Seq A exon
GTATTTGCTCCTGAATCTATGCACAAGTTAAAAATCCCAGGCTGAAACATATATCTCTTTCCTTTCCAGAGTTTCCACCCAGTACATCCTGCCTGCCTTTCTGCTGAAGATACTTACACTATTGTTTTTTCATAAACAGCTTAACCTTATGCCCAGACAGCAATGAAAACACTTCTTCCCAGTGGCCTTAGTAGCACTGCCAAGTAAAGAATAAAAAGTAGCAACATAGTTGATAAGCAAAAAGCATAAATTGCTTAAGTGTCTGACTTTAACCCATTCCAGTCATTGGGGATTTTCTGTCTAAATTTAGGAGGGAGAACAATCAACCAAAACTTTCATTGAATCTGTTGATTTGGCATCTCTAGTCATTGTGTCCTGGCAAAGTATAGCTGTCAGATCCTGTTTGCATGAGTCCTAGCTCTTTCTTGCACAGGTTTCAGGTGGGTTCATACAAACATAAAGCAGGACTTTCAGAACTCCCTGGTCATATCTTACTGCTCACAATTACATTATTTAAATTCCACTGTGAACTCTAGAATATGGAAACACTAGATACACAGTATAAACATATAGTATTCACAAATTCATGTACAGTATTTCACACACTGTCTTAATAGATAGAGGGAGACGTCACAATACGTAGATAAACCACGGTTCCTACTGAAGTGATCATGTACAACTAAATATTTCCAGCTTATTAAGATTAAAATTGTATCTTGAATATAAACCTTTAATCTCCATGTAGTGATGTCCTGAATGTGAAATGATACTTTTTAATATAGAAAATGAAACACTTTCTTTCCAG
Seq C2 exon
GCTTGAAGATGAAACTAGTCAGAAGAACAATGCCCTCAAGAAGATCCGAGAATTGGAATCTCACATCTCTGATCTCCAGGAAGACTTGGAATCTGAGAAAGCTGCAAGAAACAAAGCAGAAAAACAGAAGAGAGACCTAAGTGAAGAGCTGGAGGCTCTTAAGACAGAGCTTGAAGATACTTTGGATACCACAGCCACCCAGCAAGAGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000010534:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.603 A=NA C2=0.972
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(23.9=100),PF093045=Cortex-I_coil=PU(48.4=75.9),PF0157614=Myosin_tail_1=PU(2.9=43.1)
A:
NA
C2:
PF0003816=Filament=FE(29.8=100),PF093045=Cortex-I_coil=PD(50.5=63.9),PF0157614=Myosin_tail_1=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCAGACAAGAACTGGAGA
R:
GGGTGGCTGTGGTATCCAAAG
Band lengths:
351-1156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]