BtaINT0097159 @ bosTau6
Intron Retention
Gene
ENSBTAG00000025337 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7571]
Coordinates
chr19:29968942-29970223:-
Coord C1 exon
chr19:29969834-29970223
Coord A exon
chr19:29969069-29969833
Coord C2 exon
chr19:29968942-29969068
Length
765 bp
Sequences
Splice sites
5' ss Seq
AAGGTATCT
5' ss Score
7.56
3' ss Seq
TTGGCTTTTTTTTTTTCAAGAGT
3' ss Score
5.76
Exon sequences
Seq C1 exon
GCCCGCACTGAAGAACTGGAGGAGGAGGTGGAAGCAGAACACACACTCAGAGGCAAGATTGAGAAGCAGCGCGCGGACCTCTCCCGGGAACTGGAGGAGATCAGCGAGCGGCTGGAAGAAGCCAGCGGGGCCACTTCAGTCCAGATCGAGATGAACAAGAAGCGGGAGGCTGAGTTCCAGAAACTGCTCCGGGACCTGGAGGAGGCCACTCTGCAGCACGAGGCCACGACGACCACACTGAGGAAGAAGCACGCGGACAGTGTGGCCGAGCTGGGGGAGCAGATCGACAACCTGCAGAGGGTCAAGCAGAAGCTGGAGAAGGAGAAGAGTGAGCTGAAGATGGAGATCGATGACATGGCCAGTAACATCGAGACCGTCTCCAAGTCAAAG
Seq A exon
GTATCTGATGCTTTTGCTCTCTGCAAAGGCGAGGCAGCATCCACCTGCTGGGTGAGCAGGTACAGTTCCATGCCTGCAACTCACTGCATGTTCTCAACGGTAACACTCTCTCCACTTCCATCTGCTCCTGGCTCCCCAAATTCATTCAGGTCACCAGAGCCCTGATCCAAAGATCTGCTACAACTCAAGATCTCATCATTCATCCAGTCTGTCCCAAATGCTTCCAATCCATCTCCCATTTTCTTATTTATTTATTTGTGTGTCCATGCCTGCTAAGTCACTTAAGTTGCATCTGACTCTTGTGACCCTATGGACTATAGTCTGCCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAATAATACTGGAGTGGGTTGCCATGTCCTCCTCCAGGGGATCTTCCCAACCCAGGCATCGAACCCAGGTCTCTTACGTCTCCTGTAGGTGGGTTCTTTACTACGAGTGCCACCTGGGAAGTCCATTTTTTTATTTGCTTATTATTTATTTGGCTGTGTCAAGTCTTAGCTGTGACACACAAAGTCTTTTGTTGTGATGCTCAGACTCTCTAGTTGCAGCACAAGGGTTTAATTCCTCCACAGCATGTAAGAGCTTAGTTCCTGGACCAGGGATCAAACCCGAGTTCCCTCCACTGCAAGGCAGATTCTTCAAAGTGGCAACCCCACTTTGAAGCTAAACTATCAAATGATTTGATACTGGGAACCCAGGATCCATTTTTCCCATTCATGTTGGCTTTTTTTTTTTCAAG
Seq C2 exon
AGTAATGTGGAAAGGATGTGCCGGACTGTGGAAGACCAGTTTAATGAGATCAAGGCCAAGGATGACCAACAGACACAGTTAATCCATGACCTGAATATGCAGAAGGCAAGGCTGCAGACCCAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000025337:ENSBTAT00000035550:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.785 A=NA C2=0.837
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(46.4=100),PF0157614=Myosin_tail_1=FE(15.0=100),PF123293=TMF_DNA_bd=PD(50.6=31.5)
A:
NA
C2:
PF0003816=Filament=FE(15.1=100),PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=PU(4.8=34.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGGCTGAGTTCCAGAAAC
R:
CATTTTGGGTCTGCAGCCTTG
Band lengths:
354-1119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]