GgaINT0129035 @ galGal3
Intron Retention
Gene
ENSGALG00000000779 | MYH13
Description
NA
Coordinates
chr18:310614-311214:-
Coord C1 exon
chr18:310825-311214
Coord A exon
chr18:310741-310824
Coord C2 exon
chr18:310614-310740
Length
84 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
3' ss Seq
TGCTTTCTGTGTCTTAACAGAGC
3' ss Score
11.08
Exon sequences
Seq C1 exon
GCTCGTACAGAAGAATTGGAGGAGGAAATTGAGGCTGAACGTGCAATCCGTGCAAAGACTGAAAAGCAGCGAGCTGACCTCTCCAGGGAGCTGGAGGAGATCAGTGAGCGCCTGGAGGAAGCAGGAGGGGCTACAGCAGCTCAGATCGAGATGAACAAGAAGCGTGAGGCAGAATTTCAGAAGATGCGCCGTGACCTCGAAGAGGCCACGCTGCAGCACGAAGCCACGGCTGCTGCCCTGCGGAAGAAGCATGCGGACAGCACAGCGGAGCTTGGGGAGCAGATCGACAACCTGCAACGTGTCAAGCAGAAGCTGGAGAAGGAGAAGAGTGAGCTGAAGATGGAGATTGATGACTTGGCCAGCAACATGGAGTCTGTCTCCAAAGCTAAG
Seq A exon
GTTAGATTAAATATTTCTCACCACTGCAGTCATTTTTCTGAACAATTAAATGAGCTGATAGGTATGCTTTCTGTGTCTTAACAG
Seq C2 exon
AGCAATCTGGAAAAGATGTGTAGAGCTCTCGAAGACCAGTACAGTGAAGTCAGAACTAAAGATGATGAGCATATGCGGCTAATTAATGATATGAACACACAGAAAACACGTCTACAGACTGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000779:ENSGALT00000001184:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.953
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(50.8=100),PF0157614=Myosin_tail_1=FE(33.2=100),PF123293=TMF_DNA_bd=PD(50.0=30.8),PF131661=AAA_13=PU(17.7=35.4)
A:
NA
C2:
PF0003816=Filament=PD(9.8=58.1),PF0157614=Myosin_tail_1=FE(10.8=100),PF131661=AAA_13=FE(16.2=100),PF059116=DUF869=PU(29.1=58.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAACGTGTCAAGCAGAAG
R:
AGCCGCATATGCTCATCATCT
Band lengths:
179-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]